Factsheet for Bra004879.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra003197.1-P
Bra004879.1-P
Bra005537.1-P
Bra007101.1-P
Bra012201.1-P
Bra013635.1-P
Bra016482.1-P
Bra016703.1-P
Bra020834.1-P
Bra022916.1-P
Bra024392.1-P
Bra029883.1-P
Bra030221.1-P
Bra030874.1-P
Bra032645.1-P
Bra033247.1-P
Bra039922.1-P
Bra040332.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G44950.1	Bra032645.1-P	AT1G01630.1	21798944
AT2G44950.1	Bra033247.1-P	AT1G01630.1	21798944
AT2G44950.1	Bra016703.1-P	AT1G14400.1	18849490
AT2G44950.1	Bra012201.1-P	AT1G19980.1	21798944
AT2G44950.1	Bra016482.1-P	AT1G19980.1	21798944
AT2G44950.1	Bra030874.1-P	AT1G55250.1	18849490
AT2G44950.1	Bra030221.1-P	AT2G22640.1	21798944
AT2G44950.1	Bra039922.1-P	AT2G22640.1	21798944
AT2G44950.1	Bra005537.1-P	AT2G32980.1	21798944
AT2G44950.1	Bra022916.1-P	AT2G32980.1	21798944
AT2G44950.1	Bra004879.1-P	AT2G44950.1	18849490
AT2G44950.1	Bra040332.1-P	AT2G44950.1	18849490
AT2G44950.1	Bra029883.1-P	AT3G10970.1	21798944
AT2G44950.1	Bra003197.1-P	AT3G54826.1	21798944
AT2G44950.1	Bra007101.1-P	AT3G54826.1	21798944
AT2G44950.1	Bra013635.1-P	AT4G22720.1	21798944
AT2G44950.1	Bra020834.1-P	AT4G22720.1	21798944
AT2G44950.1	Bra024392.1-P	AT5G65495.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX74700	Canola	nucleus	96.68	99.21
Bra040332.1-P	Field mustard	nucleus	84.29	86.69
AT2G44950.1	Thale cress	nucleus	83.41	85.88
VIT_15s0021g02140.t01	Wine grape	nucleus	52.88	54.44
GSMUA_Achr4P26970_001	Banana	nucleus	21.13	50.0
KRH30315	Soybean	nucleus	48.45	49.83
KRH75261	Soybean	nucleus	48.45	49.77
Solyc11g013370.1.1	Tomato	nucleus	46.57	49.7
GSMUA_Achr1P01610_001	Banana	nucleus	42.15	43.25
HORVU0Hr1G018210.6	Barley	nucleus	40.38	41.81
Os04t0550400-01	Rice	nucleus	40.27	41.18
TraesCS6B01G274100.2	Wheat	nucleus	39.71	40.98
TraesCS3B01G401200.2	Wheat	nucleus	39.38	40.92
TraesCS3D01G362300.2	Wheat	nucleus	39.38	40.92
TraesCS6A01G251200.2	Wheat	nucleus	39.6	40.87
TraesCS6D01G233000.5	Wheat	nucleus	39.6	40.87
TraesCS3A01G369300.2	Wheat	nucleus	38.94	40.46
GSMUA_Achr4P26960_001	Banana	nucleus	22.01	39.33
EER88892	Sorghum	cytosol	36.84	39.13
Zm00001d014640_P035	Maize	cytosol	36.62	38.49
Zm00001d036507_P003	Maize	cytosol	34.73	36.05
Bra030874.1-P	Field mustard	nucleus	27.65	28.34

Protein Annotations

MapMan:19.2.2.1.5.3.2	Gene3D:3.30.40.10	EnsemblPlantsGene:Bra004879	EnsemblPlants:Bra004879.1	EnsemblPlants:Bra004879.1-P	ncoils:Coil
InterPro:E3_ubiquit_lig_Bre1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0010390	GO:GO:0016043	GO:GO:0016740	GO:GO:0019538
InterPro:IPR001841	InterPro:IPR013083	UniProt:M4CKZ3	PFAM:PF13920	ScanProsite:PS00518	PFscan:PS50089
PANTHER:PTHR23163	PANTHER:PTHR23163:SF3	SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI0002547E3C	InterPro:Znf_RING
InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_RING_CS	SEG:seg	:	:	:

Description

AT2G44950 (E=0.0) RDO4, HUB1 | HUB1 (HISTONE MONO-UBIQUITINATION 1); protein binding / protein homodimerization/ ubiquitin-protein ligase/ zinc ion binding

Coordinates

chrA05:-:2270073..2274586

Molecular Weight (calculated)

102255.0 Da

IEP (calculated)

7.729

GRAVY (calculated)

-0.656

Length

904 amino acids

Sequence
(BLAST)

001: MASTGEPDRK KRHFSSISPT EAAAAVKKQP FFWPSSEDKL DTAVLQFQNL KLSQKLEAQQ VECSILEDRL SQIKDKQLPY SSSLKTVHKS WDKLTDAVES
101: CSVRVSGSSS GGHRSVNKED GSSPDIKDDF INRLLETGAT ESSSSSNICS NGMEDGRGNN TSTQVTQTLH NLVAATNDIR CLKDELYPTV LKTGLDKGVT
201: STTIGFQLLS WSYTELHSIL DSCGQQLALN ELESEVKSFR VALDDVLVKF KSLSRELKSY RDADARVRAD LKRIRGELED EVVELQQCNG DLSALRAERD
301: ATAGAFFPVL SPGNKLASSD KTRDKQRDLQ DMEGVLKELT VLASSRLQEL KELHKERTKI LERTSILQNK SKSVRGISSS QACLSLKDQL RRSKEAVFKY
401: MALLEKLQVE KDSLFWKERE LNIKNELVDV SRRTSAVADS RMASLDVEIQ KQHDEKTRIK TRLGNISKER GRKELFADTK ALVSSFPGEM SSMRSQLSSY
501: KETAGGIHSL RADVQSLSGV LCRKGKECEA LHLRSAGYAS QLRDLNATVR DLKNSHEELQ LFLDMFKRES TDPRDIAEAK EQEYRAWAHV ESLKSSLDEQ
601: NLELRVKAAN EAEAVSQQML AAAEAEIADL RQRMDDCKRD VAKHSDVLKS KNEEHGTYLS EIQTIGSAYE DIVPQNQQLL LQVTERDDYN IKLYLEGITS
701: RQMQDALLID KYIMDKDIQQ ASASASFLSK RSLRIEDQMR LCTDQYQRLA EDRYQKSITL ENLQKKRADV VNGLEQARSK LEESHSRVEK SRVDYGALEL
801: ELETERFNRR RIEEDMETAK KKVSRLRSLI EGSSATQKLR QELSEFKEIL KCKACNDRSK EVVITKCFHL FCNPCVQKII GTRQRKCPTC SASFGPNDIK
901: PIYI

Best Arabidopsis Sequence Match ( AT2G44950.1 )
(BLAST)

001: MASTGEPDRK RRHFSSISPS EAAAAVKKQP FFWPSSEDKL DTAVLQFQNL KLSQKLEAQQ VECSILEDKL SQIKEKQLPY NSSLKTVHKS WEKLTASVES
101: CSVRVSDSSS GAHRFVNKED GSSPAVKNDF INRLLETGAT ESSSSNICSN QMEENGVNTS SQMTQTLYNL VAATEDLRCL KDELYPTVLR TNLGKDLCGQ
201: LALSELESEI KSFRGDLDDV LVKFKSLSRE LQSHRDADAK VRVDLKRIRG ELEDEVVELQ QCNGDLSALR AERDATAGAF FPVLSLGNKL ATSDRERDKQ
301: RDLQDMETVL KELTVLASGR LQQLKNLHEE RTKMLGKMSN LQNKSKSVRC ISSSQACLSL KDQLEKSKEA VFQYMALLEK LQVEKDSIVW KEREINIKNE
401: LGDVSRKTSA VTDSRMASLD SEIQKQLDEK MRIKTRLGNI SRERGRKEIF ADMKALISSF PEEMSSMRSQ LNNYKETAGG IHSLRADVQS LSGVLCRKTK
501: EYEALQLRSA DYASQLGDLN ATVCDLKNSH EELKLFLDMY KRESTDARDI AEAKEQEYRA WAHVQSLKSS LDEQNLELRV KAANEAEAVS QQMLAAAEAE
601: IADLRQKMDD CKRDVAKHSD ILKSKHEEHG TYLSEIQTIG SAYEDIVPQN QQLLLQVTER DDYNIKLFLE GITSRQMQDT LLIDKYIMDK DIQQGSAYAS
701: FLSKKSSRIE DQLRFCTDQF QKLAEDKYQK SVSLENLQKK RADIGNGLEQ ARSRLEESHS KVEQSRLDYG ALELELEIER FNRRRIEEEM EIAKKKVSRL
801: RSLIEGSSAI QKLRQELSEF KEILKCKACN DRPKEVVITK CYHLFCNPCV QKLTGTRQKK CPTCSASFGP NDIKPIYI

Arabidopsis Description

HUB1E3 ubiquitin-protein ligase BRE1-like 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8RXD6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.