Factsheet for Bra012201.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra005537.1-P
Bra022916.1-P
Bra023148.1-P
Bra039871.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G19980.1	Bra023148.1-P	AT1G30860.1	21798944
AT1G19980.1	Bra039871.1-P	AT1G30860.1	21798944
AT1G19980.1	Bra005537.1-P	AT2G32980.1	21798944
AT1G19980.1	Bra022916.1-P	AT2G32980.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY57605	Canola	nucleus	64.26	97.72
Bra016482.1-P	Field mustard	nucleus	69.37	70.0
AT1G19980.1	Thale cress	nucleus	69.37	67.54
VIT_18s0001g14300.t01	Wine grape	nucleus	45.05	39.58
PGSC0003DMT400025536	Potato	nucleus	35.74	33.15
Solyc04g081450.2.1	Tomato	nucleus	35.14	32.59
KRH36857	Soybean	nucleus	37.24	32.38
KRH11849	Soybean	nucleus	35.74	31.07
GSMUA_Achr8P19330_001	Banana	nucleus	28.83	23.13
TraesCS2B01G013500.2	Wheat	nucleus	23.42	20.31
TraesCS2D01G008300.2	Wheat	nucleus	22.52	19.58
TraesCS2A01G007200.1	Wheat	nucleus	22.22	19.42
Os04t0117200-01	Rice	cytosol	22.22	17.87
HORVU2Hr1G001310.16	Barley	cytosol	21.62	16.59
EES02317	Sorghum	cytosol	18.62	15.46
Zm00001d039489_P002	Maize	nucleus	17.12	15.32
TraesCS1A01G373900.2	Wheat	nucleus	7.81	13.61
TraesCS1B01G394200.1	Wheat	cytosol, mitochondrion, nucleus	6.91	12.37
TraesCS6A01G051100.1	Wheat	nucleus	12.61	11.23
OQU86794	Sorghum	endoplasmic reticulum, nucleus, peroxisome, plastid	14.71	9.12
TraesCS6B01G067600.1	Wheat	nucleus	14.71	8.57
TraesCS1D01G380700.1	Wheat	cytosol	17.12	8.19
TraesCS1B01G393900.3	Wheat	cytosol	13.81	7.96
TraesCS1A01G374100.1	Wheat	cytosol	14.11	7.94
TraesCS1D01G380600.1	Wheat	nucleus	10.21	7.64

Protein Annotations

EnsemblPlants:Bra012201.1	EnsemblPlants:Bra012201.1-P	EnsemblPlantsGene:Bra012201	ncoils:Coil	PANTHER:PTHR35992	SEG:seg
UniParc:UPI000254160E	UniProt:M4D6U1	MapMan:35.2	:	:	:

Description

AT1G19980 (E=2e-119) | cytomatrix protein-related

Coordinates

chrA07:-:9330637..9331975

Molecular Weight (calculated)

38022.4 Da

IEP (calculated)

9.809

GRAVY (calculated)

-0.822

Length

333 amino acids

Sequence
(BLAST)

001: MGVKSVSRES SDRKNWDKIF KNLVKWLQMK QDQIESLLKD RKSIEDKLKT KHQNWISDVR NYEEQLSLMK REIETMEMMQ FFETSKSNLL SVLKEKDHSL
101: CSLKLDEAVD ELKDFKALFD FLTLNTSKDN GDTEAAESLE VKIRKLKLEY EKLASEKKCE VSDLRRENGF ALSQFKCIQT GFTDKLKRKD EEIAQANAKV
201: STLLSCQEQL QSSNLEKDEI ISSLKAKVAE MEGEFAKKDE EISKLSRDVE SLKKSRSFTP VLTRCTTRGK GSNGSSNVGS EVTRKKEKCA ASPPSDKEIR
301: SSKRKRVTVS ETPKLFTSTF KLPKLKSPSS GAK

Best Arabidopsis Sequence Match ( AT1G19980.1 )
(BLAST)

001: MVVKSVSGDS SERENWETIF KSLVKILQTK QDQLESLLKD KKILESEIKT NNENWLSDVR NYEDQLSLMM KEIETTKMFQ LLETYKSNLL CGLKEKDRSL
101: CNLKLEHSLD ELKDFKAWFD FLTLNTNVES VSGNSEGTAI KSLEAKIRKL KLEYEKLASE KKCEVSDLLR ENGFAWNQFK CIESEFTDKL KRKDDEIVQA
201: NTKISSLISY QEQLQSSNQE KDETISRLKA KMAEMETNST KKDEEISKLT RDLESAKKSR GFTPVLTRCT KLEKRSNGNT VGSHISTKKD KSAASTTNEK
301: VSKSSKRKRA KNMTPVSVSE VPKLFTSTFR LPKLKSPSNG AI

Arabidopsis Description

Cytomatrix protein-like protein [Source:UniProtKB/TrEMBL;Acc:Q84JE5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.