Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1A01G373900.2 | Wheat | nucleus | 31.46 | 73.3 |
| TraesCS1B01G393900.3 | Wheat | cytosol | 56.85 | 43.77 |
| TraesCS1D01G380700.1 | Wheat | cytosol | 62.25 | 39.8 |
| TraesCS2D01G008300.2 | Wheat | nucleus | 20.22 | 23.5 |
| Os04t0117200-01 | Rice | cytosol | 21.57 | 23.19 |
| EES02317 | Sorghum | cytosol | 14.83 | 16.46 |
| Zm00001d039489_P002 | Maize | nucleus | 13.48 | 16.13 |
| PGSC0003DMT400025536 | Potato | nucleus | 12.13 | 15.04 |
| Solyc04g081450.2.1 | Tomato | nucleus | 11.24 | 13.93 |
| GSMUA_Achr8P19330_001 | Banana | nucleus | 12.58 | 13.49 |
| KRH11849 | Soybean | nucleus | 11.46 | 13.32 |
| KRH36857 | Soybean | nucleus | 11.24 | 13.05 |
| VIT_18s0001g14300.t01 | Wine grape | nucleus | 11.01 | 12.93 |
| OQU86794 | Sorghum | endoplasmic reticulum, nucleus, peroxisome, plastid | 14.83 | 12.29 |
| Bra016482.1-P | Field mustard | nucleus | 8.76 | 11.82 |
| AT1G19980.1 | Thale cress | nucleus | 8.76 | 11.4 |
| CDY57605 | Canola | nucleus | 5.39 | 10.96 |
| CDY62942 | Canola | nucleus | 8.09 | 10.91 |
| CDX83731 | Canola | nucleus | 8.09 | 10.29 |
| Bra012201.1-P | Field mustard | nucleus | 7.64 | 10.21 |
| CDY43422 | Canola | nucleus | 7.42 | 10.15 |
Protein Annotations
| EnsemblPlants:TraesCS1D01G380600.1 | EnsemblPlantsGene:TraesCS1D01G380600 | ncoils:Coil | SEG:seg | MapMan:35.2 | : |
Description
No Description!
Coordinates
chr1D:-:456031290..456034999
Molecular Weight (calculated)
49921.3 Da
IEP (calculated)
4.895
GRAVY (calculated)
-0.799
Length
445 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSGGGGDDA GDGGRAEWQR IYDRVQALAA GRARLEARNR TQHEFWDARD KINHSRLHQA ELSRSRWEAA CREVLPGDDP KLAELLESDL EDSRTCEALL
101: DTENSELLVQ LKEELHENTA DHEHNSGDLI SELRKLKQVY ETRCSNKDKE ATEAVQKFQQ KLEELHVAAC KKDDEIGRLQ AEASASTNKI LVLEGKLNEM
201: HSLDKANDIQ SLKVGQPETH KHKLAFLSTI QSEEAGNSLE IIQENADHGA IAGDFRAELR KLKQAYETLS SNKDKEISAA LAVEDFLLNK LLRMDKDNAG
301: LLKIKEVEAA QANEAAQKLQ QTVEELQVAV RNKDDEIGTL RAEVGHLKIK QVEAAQKLQQ NVEELQVAVL NKDNKIGRLQ AEAGILNIKE VESVQKLQQN
401: VDVLQVELRN KDDGNCRLQA EAANPEKKDE DYCQGTQWHE QVSRS
101: DTENSELLVQ LKEELHENTA DHEHNSGDLI SELRKLKQVY ETRCSNKDKE ATEAVQKFQQ KLEELHVAAC KKDDEIGRLQ AEASASTNKI LVLEGKLNEM
201: HSLDKANDIQ SLKVGQPETH KHKLAFLSTI QSEEAGNSLE IIQENADHGA IAGDFRAELR KLKQAYETLS SNKDKEISAA LAVEDFLLNK LLRMDKDNAG
301: LLKIKEVEAA QANEAAQKLQ QTVEELQVAV RNKDDEIGTL RAEVGHLKIK QVEAAQKLQQ NVEELQVAVL NKDNKIGRLQ AEAGILNIKE VESVQKLQQN
401: VDVLQVELRN KDDGNCRLQA EAANPEKKDE DYCQGTQWHE QVSRS
001: MVVKSVSGDS SERENWETIF KSLVKILQTK QDQLESLLKD KKILESEIKT NNENWLSDVR NYEDQLSLMM KEIETTKMFQ LLETYKSNLL CGLKEKDRSL
101: CNLKLEHSLD ELKDFKAWFD FLTLNTNVES VSGNSEGTAI KSLEAKIRKL KLEYEKLASE KKCEVSDLLR ENGFAWNQFK CIESEFTDKL KRKDDEIVQA
201: NTKISSLISY QEQLQSSNQE KDETISRLKA KMAEMETNST KKDEEISKLT RDLESAKKSR GFTPVLTRCT KLEKRSNGNT VGSHISTKKD KSAASTTNEK
301: VSKSSKRKRA KNMTPVSVSE VPKLFTSTFR LPKLKSPSNG AI
101: CNLKLEHSLD ELKDFKAWFD FLTLNTNVES VSGNSEGTAI KSLEAKIRKL KLEYEKLASE KKCEVSDLLR ENGFAWNQFK CIESEFTDKL KRKDDEIVQA
201: NTKISSLISY QEQLQSSNQE KDETISRLKA KMAEMETNST KKDEEISKLT RDLESAKKSR GFTPVLTRCT KLEKRSNGNT VGSHISTKKD KSAASTTNEK
301: VSKSSKRKRA KNMTPVSVSE VPKLFTSTFR LPKLKSPSNG AI
Arabidopsis Description
Cytomatrix protein-like protein [Source:UniProtKB/TrEMBL;Acc:Q84JE5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.