Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- extracellular 2
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 2
- golgi 2
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY62942 | Canola | nucleus | 72.57 | 76.97 |
| CDY43422 | Canola | nucleus | 60.0 | 64.62 |
| AT1G19980.1 | Thale cress | nucleus | 58.86 | 60.23 |
| CDY57605 | Canola | nucleus | 35.71 | 57.08 |
| VIT_18s0001g14300.t01 | Wine grape | nucleus | 36.29 | 33.51 |
| KRH11849 | Soybean | nucleus | 33.71 | 30.81 |
| KRH36857 | Soybean | nucleus | 33.71 | 30.81 |
| PGSC0003DMT400025536 | Potato | nucleus | 29.71 | 28.97 |
| Solyc04g081450.2.1 | Tomato | nucleus | 28.86 | 28.13 |
| GSMUA_Achr8P19330_001 | Banana | nucleus | 27.43 | 23.13 |
| TraesCS2B01G013500.2 | Wheat | nucleus | 21.43 | 19.53 |
| Os04t0117200-01 | Rice | cytosol | 22.57 | 19.08 |
| TraesCS2D01G008300.2 | Wheat | nucleus | 20.86 | 19.06 |
| TraesCS2A01G007200.1 | Wheat | nucleus | 20.0 | 18.37 |
| Zm00001d039489_P002 | Maize | nucleus | 17.14 | 16.13 |
| HORVU2Hr1G001310.16 | Barley | cytosol | 19.43 | 15.67 |
| EES02317 | Sorghum | cytosol | 17.43 | 15.21 |
| TraesCS1A01G373900.2 | Wheat | nucleus | 7.43 | 13.61 |
| TraesCS1B01G394200.1 | Wheat | cytosol, mitochondrion, nucleus | 6.57 | 12.37 |
| TraesCS6A01G051100.1 | Wheat | nucleus | 12.0 | 11.23 |
| OQU86794 | Sorghum | endoplasmic reticulum, nucleus, peroxisome, plastid | 14.29 | 9.31 |
| TraesCS6B01G067600.1 | Wheat | nucleus | 14.29 | 8.74 |
| TraesCS1A01G374100.1 | Wheat | cytosol | 14.29 | 8.45 |
| TraesCS1D01G380600.1 | Wheat | nucleus | 10.29 | 8.09 |
| TraesCS1D01G380700.1 | Wheat | cytosol | 16.0 | 8.05 |
| TraesCS1B01G393900.3 | Wheat | cytosol | 13.14 | 7.96 |
Protein Annotations
| EnsemblPlants:CDX83731 | EnsemblPlantsGene:GSBRNA2T00139453001 | ncoils:Coil | PANTHER:PTHR35992 | ProteinID:CDX83731 | ProteinID:CDX83731.1 |
| SEG:seg | UniParc:UPI0004EEF0DB | MapMan:35.2 | : | : | : |
Description
BnaC08g19140D
Coordinates
chrLK031834:-:6455..9685
Molecular Weight (calculated)
40303.2 Da
IEP (calculated)
9.823
GRAVY (calculated)
-0.810
Length
350 amino acids
Sequence
(BLAST)
(BLAST)
001: MRSSSRIMEQ TKNVLSLCLY FVVHERKICD WPTCKLKLLD CKMGKKSSLE ILRIEKAGTN SSRLWKVLED KLKSQNENWI SDARNHDEQL SLMKREVETR
101: EMMQFFETSK GSLLSGFNER DHSLCNLKLE QTVDERNDFK AWFDFLTLNT NKESGSSLEA EMTKLKLEYE KKKREVSDLS RENGFVWSQL KCIESGFTDK
201: LKKKEDEIAQ ANSKISSLLS YQEQLQSSNH EKDEIISSLK AKVAEMETDS RKRDEEISKL SRELESLKKS RSFTPVLTRC TTRDKGNTVG SQVFTKKEKL
301: AASTPNQEEI KSAKRKRENK TTPATVSVIP KLFSSTFRLP KLKSPPSGAI
101: EMMQFFETSK GSLLSGFNER DHSLCNLKLE QTVDERNDFK AWFDFLTLNT NKESGSSLEA EMTKLKLEYE KKKREVSDLS RENGFVWSQL KCIESGFTDK
201: LKKKEDEIAQ ANSKISSLLS YQEQLQSSNH EKDEIISSLK AKVAEMETDS RKRDEEISKL SRELESLKKS RSFTPVLTRC TTRDKGNTVG SQVFTKKEKL
301: AASTPNQEEI KSAKRKRENK TTPATVSVIP KLFSSTFRLP KLKSPPSGAI
001: MVVKSVSGDS SERENWETIF KSLVKILQTK QDQLESLLKD KKILESEIKT NNENWLSDVR NYEDQLSLMM KEIETTKMFQ LLETYKSNLL CGLKEKDRSL
101: CNLKLEHSLD ELKDFKAWFD FLTLNTNVES VSGNSEGTAI KSLEAKIRKL KLEYEKLASE KKCEVSDLLR ENGFAWNQFK CIESEFTDKL KRKDDEIVQA
201: NTKISSLISY QEQLQSSNQE KDETISRLKA KMAEMETNST KKDEEISKLT RDLESAKKSR GFTPVLTRCT KLEKRSNGNT VGSHISTKKD KSAASTTNEK
301: VSKSSKRKRA KNMTPVSVSE VPKLFTSTFR LPKLKSPSNG AI
101: CNLKLEHSLD ELKDFKAWFD FLTLNTNVES VSGNSEGTAI KSLEAKIRKL KLEYEKLASE KKCEVSDLLR ENGFAWNQFK CIESEFTDKL KRKDDEIVQA
201: NTKISSLISY QEQLQSSNQE KDETISRLKA KMAEMETNST KKDEEISKLT RDLESAKKSR GFTPVLTRCT KLEKRSNGNT VGSHISTKKD KSAASTTNEK
301: VSKSSKRKRA KNMTPVSVSE VPKLFTSTFR LPKLKSPSNG AI
Arabidopsis Description
Cytomatrix protein-like protein [Source:UniProtKB/TrEMBL;Acc:Q84JE5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.