CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX70438
CDX78461
CDX91181
CDY67814

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G32980.1	CDX70438	AT5G11980.1	21798944
AT2G32980.1	CDX78461	AT5G11980.1	21798944
AT2G32980.1	CDX91181	AT5G11980.1	21798944
AT2G32980.1	CDY67814	AT5G11980.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY17122	Canola	cytosol	89.12	88.5
CDX84714	Canola	nucleus	87.02	83.78
AT2G32980.1	Thale cress	nucleus	85.96	82.77
CDX79491	Canola	cytosol	87.02	78.73
VIT_12s0059g01290.t01	Wine grape	nucleus	77.19	73.33
Solyc08g013990.2.1	Tomato	mitochondrion, nucleus	73.68	72.66
KRG91378	Soybean	cytosol	69.12	72.16
KRH35436	Soybean	cytosol	68.42	71.43
Os08t0204800-01	Rice	cytosol	60.7	65.53
TraesCS7A01G464500.1	Wheat	cytosol	59.65	65.38
TraesCS7B01G364500.1	Wheat	cytosol	60.0	64.77
TraesCS7B01G365000.1	Wheat	cytosol	59.65	64.64
HORVU7Hr1G106500.1	Barley	nucleus	59.65	64.39
TraesCS7A01G464000.1	Wheat	cytosol	59.65	64.39
TraesCS7D01G452100.1	Wheat	cytosol	59.65	64.39
GSMUA_Achr3P29180_001	Banana	nucleus	63.86	64.08
HORVU7Hr1G106630.1	Barley	cytosol	59.3	64.02
TraesCS7D01G451600.1	Wheat	cytosol	59.3	64.02
EES14698	Sorghum	cytosol	59.3	63.53
Zm00001d024292_P002	Maize	cytosol	59.3	61.68
GSMUA_Achr5P14990_001	Banana	plasma membrane	49.82	52.79

Protein Annotations

EnsemblPlants:CDY19427	EnsemblPlantsGene:GSBRNA2T00008983001	GO:A0A078G336	GO:GO:0007049	GO:GO:0008150	GO:GO:0009987
GO:GO:0016043	GO:GO:0031023	GO:GO:0051225	InterPro:HAUS2	ncoils:Coil	PANTHER:PTHR16039
PFAM:PF15003	ProteinID:CDY19427	ProteinID:CDY19427.1	UniParc:UPI0004EE7E59	UniProt:A0A078G336	MapMan:20.1.2.2.2

Description

BnaC04g11720DBnaC04g11720D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G336]

Coordinates

chrLK032096:-:40725..42646

Molecular Weight (calculated)

31502.1 Da

IEP (calculated)

4.759

GRAVY (calculated)

-0.452

Length

285 amino acids

Sequence
(BLAST)

001: MSMGSDSTWV GKKPIRRIGG LADALSIASD LGYAVAPPPN GFSDSEEYLQ SLASSNGERG DDLIRVLREL SSVQRKIADL QVELQGRKDD KNVAHLTHVS
101: EMQKKIETLS RITQILKDVI QNKDRIIARL QQPYSLDCIP IEAEYQKQFS ELLMRAASDY GALTASVSDF QWSQNFKEPP SVWGEMLRPI PVALASCTRF
201: FEAMSAMRES FATLQDLRVG NSAASLPATP SQRDSDCVAP PQGVTGSSFD DLAVQTTRRE AEEEDGNDYE NVRLSWPPSV KKSNV

Best Arabidopsis Sequence Match ( AT2G32980.1 )
(BLAST)

001: MSMGGDTTWV GKKPIRRIGG LSDALSIASD LGFAVAPPPS QEELQSFASS NGERGDDLIR VLRELSVVQR KIADLQVELQ GRKDDKNVAH LTHVGEMQKK
101: IETLSRITQI LKDVIQNKDR IIARLQQPYS LDCIPVEAEY QKQFSELLMK AASDYGALTA SVSDFQWSQN FKEPPSVWGE MLRPIPVALA SCTRFFEAMS
201: AMRESFATLQ ELRVGNSAVS LPTTPGGNEM THRDSDCVTP PQGRIESSFD DLAVHKTRRQ NNDQNEEEEE EEEEEDGNNN GNRRLSWPPS VKKSSV

Arabidopsis Description

AUG2AUGMIN subunit 2 [Source:UniProtKB/Swiss-Prot;Acc:O48767]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.