Factsheet for VIT_12s0059g01290.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_04s0008g01350.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G32980.1	VIT_04s0008g01350.t01	AT5G11980.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g013990.2.1	Tomato	mitochondrion, nucleus	78.0	80.97
KRG91378	Soybean	cytosol	73.67	80.95
KRH35436	Soybean	cytosol	72.33	79.49
AT2G32980.1	Thale cress	nucleus	77.67	78.72
Bra022916.1-P	Field mustard	nucleus	76.33	78.16
CDX84714	Canola	nucleus	77.0	78.04
CDY19427	Canola	cytosol	73.33	77.19
CDY17122	Canola	cytosol	72.67	75.96
Bra005537.1-P	Field mustard	cytosol	62.67	75.5
CDX79491	Canola	cytosol	77.67	73.97
Os08t0204800-01	Rice	cytosol	61.67	70.08
TraesCS7A01G464500.1	Wheat	cytosol	60.67	70.0
GSMUA_Achr3P29180_001	Banana	nucleus	65.67	69.37
HORVU7Hr1G106630.1	Barley	cytosol	61.0	69.32
TraesCS7B01G364500.1	Wheat	cytosol	60.67	68.94
TraesCS7D01G452100.1	Wheat	cytosol	60.67	68.94
HORVU7Hr1G106500.1	Barley	nucleus	60.33	68.56
TraesCS7D01G451600.1	Wheat	cytosol	60.33	68.56
TraesCS7B01G365000.1	Wheat	cytosol	60.0	68.44
TraesCS7A01G464000.1	Wheat	cytosol	60.0	68.18
EES14698	Sorghum	cytosol	59.67	67.29
Zm00001d024292_P002	Maize	cytosol	60.0	65.69
GSMUA_Achr5P14990_001	Banana	plasma membrane	49.33	55.02

Protein Annotations

EntrezGene:100244748	wikigene:100244748	MapMan:20.1.2.2.2	ProteinID:CCB51991	ProteinID:CCB51991.1	ncoils:Coil
UniProt:F6HIE5	EMBL:FN595765	GO:GO:0007049	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043
GO:GO:0031023	GO:GO:0051225	InterPro:HAUS2	EntrezGene:LOC100244748	wikigene:LOC100244748	PFAM:PF15003
PANTHER:PTHR16039	UniParc:UPI00015CADF3	ArrayExpress:VIT_12s0059g01290	EnsemblPlantsGene:VIT_12s0059g01290	EnsemblPlants:VIT_12s0059g01290.t01	unigene:Vvi.14993
RefSeq:XP_002274696	RefSeq:XP_002274696.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr12:+:6232967..6243494

Molecular Weight (calculated)

33519.7 Da

IEP (calculated)

5.136

GRAVY (calculated)

-0.557

Length

300 amino acids

Sequence
(BLAST)

001: MSMGSDTSWV GKKPLRRLGG MSDALSIAAD LGFSVNPPPS QEELQNLSST GEKGDDLIRV LRELTTVQRK IADLQVELQG RKEDKNVAHL THVSEMEKKC
101: ETLARITAIL KDVIQNKDRI IARLQQPYSL DCIPVEAEFQ KQFSELLMKA ASDYGALTAS VADFQWTQNF KEPPSVWGEM LRPIPVALAS CTRFFEAMSA
201: MRESFATLQN LRVGNSASSL PTTPAKDPYQ RIPGDSECVT PPPWRNEPSF DDLAVRSVRR QENERQEVED ENSEVGELNQ VDGTSHRRLS WPPSVKKSGM

Best Arabidopsis Sequence Match ( AT2G32980.1 )
(BLAST)

001: MSMGGDTTWV GKKPIRRIGG LSDALSIASD LGFAVAPPPS QEELQSFASS NGERGDDLIR VLRELSVVQR KIADLQVELQ GRKDDKNVAH LTHVGEMQKK
101: IETLSRITQI LKDVIQNKDR IIARLQQPYS LDCIPVEAEY QKQFSELLMK AASDYGALTA SVSDFQWSQN FKEPPSVWGE MLRPIPVALA SCTRFFEAMS
201: AMRESFATLQ ELRVGNSAVS LPTTPGGNEM THRDSDCVTP PQGRIESSFD DLAVHKTRRQ NNDQNEEEEE EEEEEDGNNN GNRRLSWPPS VKKSSV

Arabidopsis Description

AUG2AUGMIN subunit 2 [Source:UniProtKB/Swiss-Prot;Acc:O48767]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.