Factsheet for VIT_04s0008g01350.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol, nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_07s0141g00220.t01
VIT_11s0016g00710.t01
VIT_17s0000g06020.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G11980.1	VIT_11s0016g00710.t01	AT1G19180.1	21798944
AT5G11980.1	VIT_17s0000g06020.t01	AT3G47620.1	21798944
AT5G11980.1	VIT_07s0141g00220.t01	AT4G02590.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400017657	Potato	nucleus	81.26	80.42
Solyc01g087650.2.1	Tomato	plastid	80.21	79.51
KRH07953	Soybean	cytosol	79.33	78.37
KRH69706	Soybean	cytosol	79.33	78.1
Bra023354.1-P	Field mustard	cytosol	77.23	77.5
AT5G11980.1	Thale cress	cytosol	76.01	76.27
Bra006136.1-P	Field mustard	cytosol, nucleus, peroxisome	76.01	72.82
EER92716	Sorghum	cytosol	66.72	64.25
Os12t0538300-01	Rice	cytosol	67.08	62.79
TraesCS5D01G107800.1	Wheat	cytosol	66.9	62.73
TraesCS5B01G101300.1	Wheat	cytosol	66.72	62.56
TraesCS5A01G095100.1	Wheat	cytosol	66.37	61.43
HORVU5Hr1G025740.13	Barley	vacuole	66.37	58.67
GSMUA_Achr3P32460_001	Banana	extracellular, nucleus, plasma membrane	37.48	50.0
Zm00001d028871_P001	Maize	nucleus	9.63	50.0
Zm00001d006805_P001	Maize	cytosol, mitochondrion, nucleus	9.46	49.09
Zm00001d053677_P001	Maize	cytosol, mitochondrion, nucleus	9.46	49.09
CDY04606	Canola	cytosol	8.06	46.94

Protein Annotations

EntrezGene:100245590	wikigene:100245590	MapMan:22.6.2.8	ProteinID:CBI20672	ProteinID:CBI20672.3	InterPro:COG8
InterPro:COG8_Metazoal_Plant	InterPro:Cullin_repeat-like_dom_sf	UniProt:D7STS3	EMBL:FN595231	GO:GO:0000003	GO:GO:0000139
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005794	GO:GO:0006810
GO:GO:0006891	GO:GO:0007030	GO:GO:0008150	GO:GO:0009506	GO:GO:0009653	GO:GO:0009856
GO:GO:0009860	GO:GO:0009987	GO:GO:0015031	GO:GO:0016020	GO:GO:0016043	GO:GO:0016049
GO:GO:0017119	GO:GO:0030154	GO:GO:0040007	GO:GO:0048193	EntrezGene:LOC100245590	wikigene:LOC100245590
PFAM:PF04124	PIRSF:PIRSF015415	PANTHER:PTHR21311	SUPFAM:SSF74788	UniParc:UPI00015C8B77	ArrayExpress:VIT_04s0008g01350
EnsemblPlantsGene:VIT_04s0008g01350	EnsemblPlants:VIT_04s0008g01350.t01	unigene:Vvi.19465	RefSeq:XP_002279909	RefSeq:XP_002279909.2	SEG:seg

Description

Conserved oligomeric Golgi complex subunit 8 [Source:UniProtKB/TrEMBL;Acc:D7STS3]

Coordinates

chr4:-:1104486..1110866

Molecular Weight (calculated)

63768.5 Da

IEP (calculated)

4.510

GRAVY (calculated)

-0.118

Length

571 amino acids

Sequence
(BLAST)

001: MDSDAAEDSS PMATLLPLAS VSQQPYVSEL LSFTLDRLHK EPELLRVDAE RIRRQMQEVA VNNYRAFISA ADALLAIREE VSSVDKHLES LINEIPKLTS
101: GCTEFIESAE QILEERKMNQ TLLANHSTLL DLLEIPQLMD TCVRNGNYDE ALDLEAFVCK LSTMHPKLPV IQALAAEVRQ TTQSLLHQLL QKLRSNILLP
201: DCLRIIGYLR RIGVFSEFEM RLQFLRCREA WLTGILDDLD QKNAYDYLKG MVNCQRMHLF DVVNQYRAIF ADDTSGSEEN YDGGLLFSWA MHQITSHLRT
301: LKAMLPKITE GGSLSNILDQ CMYCAMGLGW VGLDFRGLLP SLFEEAVLNL FSKNMNTAIE NFQLVLDSHR WVPLPAVGFP SGGVGEETRE DVTPPSYLME
401: HPPLAVFVNG VSAAMNELRP CAPISLKHVL AQELINGLRA VSNSLLRYNA SRMLRENESL LFLSLCRAFI EVAYPHCATC FGRCYPGGAA LIMDAKNLYD
501: GIGNLLAVSA SRELPKSVTT TEENSVTVTE NGNLPNEENG VMPETEQALN GKVDEEEEND LTSLTEKPAD E

Best Arabidopsis Sequence Match ( AT5G11980.1 )
(BLAST)

001: MAMEVGEMSQ PEATASLLSL ASATQQPYVS ELLSFTLDRL HKEPELLRVD AERIQRQMQE VAVGNYRAFI TAADALLAIR QEVSSIDKHL ESLIGEVPKL
101: TSGCTEFIDS AENILEKRKM NQALLANHST LLDLLEIPQL MDTCVRNGNF DEALDLEAFV SKLATLHPKL PVIQALAAEV RQTTQSLLSQ LLQKLRSNIQ
201: LPECLRIIGY LRRIGVFGEY EMRLQFLRCR EAWLTGILED LDQKNAYEYL KGMINCHRMH LFDVVNQYRA IFSDDTSGSE ENYDGGLLFS WAMHQITSHL
301: KTLKIMLPKI TEGGSLSNIL DQCMYCAMGL GGVGLDFRGL LPPLFEEAVL NLFSKNMSTA VENFQLVLDS HRWVPLPSVG FPSSGINEDS KDDVTPPSYL
401: MEHPPLAVFI NGVSSALNEL RPCAPLSLKN VVAHELIKGL QAVSDSLLRY NTTRMLRLSE SNLFLSLCRA FVEVVFPHCA TCFGRCYPGG ATIVMDAKSA
501: YEGLGRILAA SSSQEPSNKS PKVISTDTKD ASENGVASQP EEKQAENPNA KEEDNSPIPL QTPEITPES

Arabidopsis Description

Conserved oligomeric Golgi complex component-related / COG complex component-like protein [Source:UniProtKB/TrEMBL;Acc:Q84K25]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.