Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d006805_P001 | Maize | cytosol, mitochondrion, nucleus | 98.18 | 98.18 |
| Zm00001d053677_P001 | Maize | cytosol, mitochondrion, nucleus | 98.18 | 98.18 |
| Zm00001d048217_P001 | Maize | cytosol | 93.64 | 17.61 |
| Zm00001d028010_P001 | Maize | cytosol | 89.09 | 16.64 |
| GSMUA_Achr3P32460_001 | Banana | extracellular, nucleus, plasma membrane | 49.09 | 12.62 |
| KRH07953 | Soybean | cytosol | 50.91 | 9.69 |
| AT5G11980.1 | Thale cress | cytosol | 50.0 | 9.67 |
| KRH69706 | Soybean | cytosol | 50.91 | 9.66 |
| VIT_04s0008g01350.t01 | Wine grape | cytosol | 50.0 | 9.63 |
| Solyc01g087650.2.1 | Tomato | plastid | 50.0 | 9.55 |
| Bra023354.1-P | Field mustard | cytosol | 49.09 | 9.49 |
| PGSC0003DMT400017657 | Potato | nucleus | 49.09 | 9.36 |
| Bra006136.1-P | Field mustard | cytosol, nucleus, peroxisome | 49.09 | 9.06 |
| CDY04606 | Canola | cytosol | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:Zm00001d028871_P001 | EnsemblPlants:Zm00001d028871_T001 | EnsemblPlantsGene:Zm00001d028871 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005794 | GO:GO:0017119 | InterPro:COG8 | PANTHER:PTHR21311 | PFAM:PF04124 |
| ProteinID:ONL97223.1 | SEG:seg | UniParc:UPI0004DEC206 | UniProt:A0A1D6K087 | MapMan:35.2 | : |
Description
conserved oligomeric Golgi complex component-related / COG complex component-related
Coordinates
chr1:+:49267598..49268126
Molecular Weight (calculated)
12211.5 Da
IEP (calculated)
5.133
GRAVY (calculated)
-0.225
Length
110 amino acids
Sequence
(BLAST)
(BLAST)
001: MDLLDARHRH TPDSSSSPHA ASDMGLPLAG AAYQPYVSEL LSFSIERLHK EPELLRVDAE RVRRQMQEVA VENYGAFIAA SEALSFVRAQ LESFDGHLEA
101: MVMRSIPPCS
101: MVMRSIPPCS
001: MAMEVGEMSQ PEATASLLSL ASATQQPYVS ELLSFTLDRL HKEPELLRVD AERIQRQMQE VAVGNYRAFI TAADALLAIR QEVSSIDKHL ESLIGEVPKL
101: TSGCTEFIDS AENILEKRKM NQALLANHST LLDLLEIPQL MDTCVRNGNF DEALDLEAFV SKLATLHPKL PVIQALAAEV RQTTQSLLSQ LLQKLRSNIQ
201: LPECLRIIGY LRRIGVFGEY EMRLQFLRCR EAWLTGILED LDQKNAYEYL KGMINCHRMH LFDVVNQYRA IFSDDTSGSE ENYDGGLLFS WAMHQITSHL
301: KTLKIMLPKI TEGGSLSNIL DQCMYCAMGL GGVGLDFRGL LPPLFEEAVL NLFSKNMSTA VENFQLVLDS HRWVPLPSVG FPSSGINEDS KDDVTPPSYL
401: MEHPPLAVFI NGVSSALNEL RPCAPLSLKN VVAHELIKGL QAVSDSLLRY NTTRMLRLSE SNLFLSLCRA FVEVEF
101: TSGCTEFIDS AENILEKRKM NQALLANHST LLDLLEIPQL MDTCVRNGNF DEALDLEAFV SKLATLHPKL PVIQALAAEV RQTTQSLLSQ LLQKLRSNIQ
201: LPECLRIIGY LRRIGVFGEY EMRLQFLRCR EAWLTGILED LDQKNAYEYL KGMINCHRMH LFDVVNQYRA IFSDDTSGSE ENYDGGLLFS WAMHQITSHL
301: KTLKIMLPKI TEGGSLSNIL DQCMYCAMGL GGVGLDFRGL LPPLFEEAVL NLFSKNMSTA VENFQLVLDS HRWVPLPSVG FPSSGINEDS KDDVTPPSYL
401: MEHPPLAVFI NGVSSALNEL RPCAPLSLKN VVAHELIKGL QAVSDSLLRY NTTRMLRLSE SNLFLSLCRA FVEVEF
Arabidopsis Description
Conserved oligomeric Golgi complex component-related / COG complex component-like protein [Source:UniProtKB/TrEMBL;Acc:Q84K25]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.