Subcellular Localization
min:
: max
Winner_takes_all: plastid, cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 2
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER98969 | Sorghum | cytosol | 62.84 | 61.99 |
| Zm00001d005813_P002 | Maize | cytosol, plastid | 56.88 | 54.63 |
| TraesCS5B01G211000.1 | Wheat | nucleus | 45.41 | 43.04 |
| TraesCS5D01G219300.2 | Wheat | nucleus | 44.95 | 42.61 |
| Os09t0439200-01 | Rice | plastid | 44.5 | 41.81 |
| HORVU5Hr1G062290.6 | Barley | mitochondrion, plastid | 44.5 | 32.88 |
| TraesCS5A01G212800.1 | Wheat | plastid | 44.5 | 32.77 |
| GSMUA_Achr3P10270_001 | Banana | cytosol | 33.49 | 32.3 |
| Zm00001d044708_P001 | Maize | cytosol, extracellular, plastid | 21.56 | 31.33 |
| GSMUA_Achr10P... | Banana | cytosol | 22.94 | 30.86 |
| GSMUA_Achr6P31050_001 | Banana | cytosol | 29.36 | 30.05 |
| GSMUA_Achr5P05170_001 | Banana | cytosol, mitochondrion, nucleus | 33.03 | 29.88 |
| PGSC0003DMT400075155 | Potato | nucleus | 29.36 | 29.77 |
| Solyc07g042170.2.1 | Tomato | cytosol | 29.36 | 29.63 |
| Zm00001d029448_P001 | Maize | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole | 30.28 | 28.95 |
| Zm00001d022139_P001 | Maize | plastid | 30.73 | 28.76 |
| GSMUA_Achr3P05920_001 | Banana | nucleus | 33.03 | 28.69 |
| Solyc12g009220.1.1 | Tomato | nucleus | 33.03 | 28.57 |
| GSMUA_Achr7P19850_001 | Banana | cytosol | 31.65 | 28.51 |
| GSMUA_Achr5P22110_001 | Banana | mitochondrion | 32.11 | 28.34 |
| GSMUA_Achr9P14370_001 | Banana | cytosol | 33.95 | 27.92 |
| Zm00001d033972_P002 | Maize | cytosol, extracellular, plastid | 21.56 | 27.17 |
| PGSC0003DMT400007592 | Potato | nucleus | 31.65 | 27.17 |
| Zm00001d006860_P001 | Maize | plastid | 32.11 | 26.32 |
| GSMUA_AchrUn_... | Banana | nucleus | 29.36 | 25.91 |
| CDX68156 | Canola | cytosol | 20.64 | 24.86 |
| Bra008172.1-P | Field mustard | nucleus | 26.15 | 23.75 |
| VIT_11s0016g00710.t01 | Wine grape | cytosol, plastid | 28.9 | 23.51 |
| CDY46022 | Canola | nucleus | 25.69 | 23.33 |
| AT1G19180.1 | Thale cress | cytosol | 27.06 | 23.32 |
| CDX73127 | Canola | cytosol | 26.15 | 23.27 |
| CDY37269 | Canola | nucleus | 25.23 | 22.92 |
| CDY45408 | Canola | cytosol | 25.69 | 22.86 |
| CDX85865 | Canola | cytosol | 23.39 | 22.77 |
| Bra015880.1-P | Field mustard | cytosol | 25.23 | 22.45 |
| Bra016520.1-P | Field mustard | plastid | 26.61 | 22.39 |
| CDX73289 | Canola | cytosol | 19.27 | 22.34 |
| CDY26697 | Canola | plastid | 25.69 | 22.13 |
| Bra003778.1-P | Field mustard | cytosol | 22.48 | 22.07 |
| Bra025713.1-P | Field mustard | plastid | 25.69 | 22.05 |
| Zm00001d021924_P001 | Maize | plastid | 13.76 | 21.9 |
| Zm00001d046270_P001 | Maize | plastid | 13.76 | 21.9 |
| CDY41023 | Canola | plastid | 25.23 | 21.65 |
| CDX83781 | Canola | plastid | 25.69 | 21.21 |
| CDX96675 | Canola | plastid | 25.23 | 20.91 |
| Bra031065.1-P | Field mustard | plastid | 26.15 | 20.88 |
| Zm00001d002029_P003 | Maize | nucleus | 20.64 | 20.83 |
| AT1G74950.1 | Thale cress | cytosol | 23.39 | 20.48 |
| Zm00001d026477_P002 | Maize | nucleus | 21.56 | 20.43 |
| Zm00001d013855_P002 | Maize | plastid | 15.14 | 14.41 |
| CDX81917 | Canola | plastid | 26.61 | 11.42 |
| CDY21679 | Canola | plastid | 26.61 | 10.64 |
Protein Annotations
| EMBL:BT067050 | EMBL:KJ727957 | EMBL:KU512876 | EnsemblPlants:Zm00001d020614_P001 | EnsemblPlants:Zm00001d020614_T001 | EnsemblPlantsGene:Zm00001d020614 |
| EntrezGene:100384222 | InterPro:CCT_CS | InterPro:IPR010399 | InterPro:Tify_dom | PANTHER:PTHR33077 | PANTHER:PTHR33077:SF12 |
| PFAM:PF06200 | PFAM:PF09425 | PFscan:PS51320 | ProteinID:ONM55267.1 | SEG:seg | SMART:SM00979 |
| UniParc:UPI000195CC6B | UniProt:C0PFI1 | MapMan:15.5.45 | : | : | : |
Description
ZIM-transcription factor 28 ZIM-transcription factor 28
Coordinates
chr7:-:125133740..125135825
Molecular Weight (calculated)
22536.7 Da
IEP (calculated)
9.106
GRAVY (calculated)
-0.389
Length
218 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGHAPARDK TTTGFAATCS LLSQFLKEKK GGLQGLGGLA MAPAPAAGAG AFRPPTTMNL LSALDAAKAT VGEPEGHGQR TGGNPREAAG EEAQQLTIFY
101: GGKVVVFDRF PSAKVKDLLQ IVSPPGADAV VDGAGAGAAV PTQNLPRPSH DSLSADLPIA RRNSLHRFLE KRKDRITAKA PYQVNSSVGA EASKAEKPWL
201: GLGQEQEGSD GRQAGEEM
101: GGKVVVFDRF PSAKVKDLLQ IVSPPGADAV VDGAGAGAAV PTQNLPRPSH DSLSADLPIA RRNSLHRFLE KRKDRITAKA PYQVNSSVGA EASKAEKPWL
201: GLGQEQEGSD GRQAGEEM
001: MSSFSAECWD FSGRKPSFSQ TCTRLSRYLK EKGSFGDLSL GMTCKPDVNG GSRQPTMMNL FPCEASGMDS SAGQEDIKPK TMFPRQSSFS SSSSSGTKED
101: VQMIKETTKS VKPESQSAPL TIFYGGRVMV FDDFSAEKAK EVIDLANKGS AKSFTCFTAE VNNNHSAYSQ KEIASSPNPV CSPAKTAAQE PIQPNPASLA
201: CELPIARRAS LHRFLEKRKD RITSKAPYQI DGSAEASSKP TNPAWLSSR
101: VQMIKETTKS VKPESQSAPL TIFYGGRVMV FDDFSAEKAK EVIDLANKGS AKSFTCFTAE VNNNHSAYSQ KEIASSPNPV CSPAKTAAQE PIQPNPASLA
201: CELPIARRAS LHRFLEKRKD RITSKAPYQI DGSAEASSKP TNPAWLSSR
Arabidopsis Description
TIFY10BTIFY10B [Source:UniProtKB/TrEMBL;Acc:A0A178WA69]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.