Factsheet for Zm00001d006150_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d002029_P003
Zm00001d005726_P001
Zm00001d005813_P002
Zm00001d006860_P001
Zm00001d013855_P002
Zm00001d020409_P002
Zm00001d020614_P001
Zm00001d021924_P001
Zm00001d022139_P001
Zm00001d026477_P002
Zm00001d029448_P001
Zm00001d032009_P001
Zm00001d033972_P002
Zm00001d044708_P001
Zm00001d046270_P001
Zm00001d050365_P006

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G32640.1	Zm00001d005813_P002	AT1G19180.1	18547396
AT1G32640.1	Zm00001d006860_P001	AT1G19180.1	18547396
AT1G32640.1	Zm00001d020614_P001	AT1G19180.1	18547396
AT1G32640.1	Zm00001d022139_P001	AT1G19180.1	18547396
AT1G32640.1	Zm00001d029448_P001	AT1G19180.1	18547396
AT1G32640.1	Zm00001d005726_P001	AT1G48500.1	19309455
AT1G32640.1	Zm00001d020409_P002	AT1G48500.1	19309455
AT1G32640.1	Zm00001d032009_P001	AT1G48500.1	19309455
AT1G32640.1	Zm00001d050365_P006	AT1G48500.1	19309455
AT1G32640.1	Zm00001d005726_P001	AT3G17860.1	17637675
AT1G32640.1	Zm00001d020409_P002	AT3G17860.1	17637675
AT1G32640.1	Zm00001d032009_P001	AT3G17860.1	17637675
AT1G32640.1	Zm00001d050365_P006	AT3G17860.1	17637675
AT1G32640.1	Zm00001d002029_P003	AT3G43440.1	19309455
AT1G32640.1	Zm00001d013855_P002	AT3G43440.1	19309455
AT1G32640.1	Zm00001d021924_P001	AT3G43440.1	19309455
AT1G32640.1	Zm00001d026477_P002	AT3G43440.1	19309455
AT1G32640.1	Zm00001d033972_P002	AT3G43440.1	19309455
AT1G32640.1	Zm00001d044708_P001	AT3G43440.1	19309455
AT1G32640.1	Zm00001d046270_P001	AT3G43440.1	19309455

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d021164_P001	Maize	nucleus	83.85	84.14
EER99201	Sorghum	nucleus	84.19	82.77
TraesCS5D01G313600.1	Wheat	nucleus	64.95	67.74
TraesCS5B01G307000.1	Wheat	nucleus	64.6	67.38
TraesCS5A01G306200.1	Wheat	nucleus	63.92	66.67
TraesCS5A01G306500.1	Wheat	nucleus	64.26	66.55
TraesCS5D01G313500.1	Wheat	nucleus	63.57	66.31
TraesCS5B01G306800.1	Wheat	nucleus	62.54	65.0
HORVU0Hr1G025420.1	Barley	cytosol, nucleus	33.68	59.76
TraesCS5A01G306400.1	Wheat	nucleus	45.36	59.19
HORVU5Hr1G079900.1	Barley	cytosol	53.26	57.41
Zm00001d031717_P001	Maize	nucleus	48.45	55.51
TraesCS1A01G369200.1	Wheat	nucleus	36.77	54.04
Zm00001d052728_P001	Maize	nucleus	50.52	53.45
Bra017527.1-P	Field mustard	nucleus	24.4	31.42
Bra013263.1-P	Field mustard	nucleus	24.74	26.57
VIT_02s0025g02610.t01	Wine grape	nucleus	29.9	24.1
Bra024992.1-P	Field mustard	nucleus	22.34	23.99
CDY70013	Canola	nucleus	19.93	23.02
Solyc10g009290.1.1	Tomato	nucleus	34.71	22.39
KRH47834	Soybean	nucleus	35.05	21.98
PGSC0003DMT400047220	Potato	nucleus	34.02	21.9
Solyc01g096370.2.1	Tomato	nucleus	33.33	21.56
PGSC0003DMT400014097	Potato	nucleus	33.33	21.23
Solyc08g083170.1.1	Tomato	extracellular	27.84	20.93
PGSC0003DMT400014089	Potato	nucleus	27.49	20.83
KRH06400	Soybean	nucleus	33.33	20.82
AT4G00870.1	Thale cress	nucleus, plastid	30.24	20.8
PGSC0003DMT400028057	Potato	nucleus	27.49	20.57
VIT_15s0048g02820.t01	Wine grape	nucleus	34.36	20.12
Solyc10g009270.2.1	Tomato	nucleus	27.15	20.1
PGSC0003DMT400031899	Potato	plastid	29.21	19.72
Zm00001d038966_P001	Maize	plastid	12.71	18.14
Zm00001d026009_P001	Maize	plastid	12.71	18.14
AT5G46830.1	Thale cress	nucleus	29.9	17.03
Zm00001d043706_P001	Maize	nucleus	26.8	16.7
Solyc08g008600.2.1	Tomato	nucleus	25.77	16.59
Bra010178.1-P	Field mustard	nucleus	33.68	16.33
PGSC0003DMT400015017	Potato	nucleus	25.43	16.23
Bra017520.1-P	Field mustard	nucleus	27.49	16.06
Bra024998.1-P	Field mustard	nucleus	31.96	16.03
Bra017523.1-P	Field mustard	nucleus	27.84	15.98
AT1G32640.1	Thale cress	nucleus	34.02	15.89
AT4G17880.1	Thale cress	nucleus	31.62	15.62
AT5G46760.1	Thale cress	nucleus	31.62	15.54
PGSC0003DMT400002963	Potato	nucleus	30.58	14.88
Solyc08g005050.2.1	Tomato	nucleus	23.71	14.87
VIT_02s0012g01320.t01	Wine grape	nucleus	33.68	14.78
KRH45440	Soybean	nucleus	32.99	14.68
Zm00001d033413_P001	Maize	nucleus	15.81	14.47
KRH75613	Soybean	nucleus	31.62	14.44
KRH74418	Soybean	nucleus	31.62	14.33
Zm00001d003604_P001	Maize	nucleus	16.49	14.29
Zm00001d013370_P001	Maize	plastid	18.21	14.21
Zm00001d028315_P001	Maize	cytosol	6.53	14.07
Zm00001d025462_P001	Maize	nucleus	15.81	13.94
Zm00001d030028_P001	Maize	nucleus	32.99	13.62
Zm00001d033848_P004	Maize	nucleus	16.84	13.46
Zm00001d030232_P001	Maize	nucleus	14.78	13.44
Zm00001d047017_P001	Maize	nucleus	32.3	13.37
Zm00001d033412_P001	Maize	nucleus	16.84	13.28
Solyc08g076930.1.1	Tomato	nucleus	30.93	13.06
Bra024993.1-P	Field mustard	nucleus	16.84	13.0
PGSC0003DMT400045204	Potato	nucleus	30.93	12.97
Zm00001d024781_P001	Maize	nucleus	15.46	12.75
Zm00001d039271_P001	Maize	nucleus	26.8	12.66
Zm00001d028312_P001	Maize	nucleus	13.75	12.5
Zm00001d031167_P002	Maize	nucleus	16.84	12.47
KRH39540	Soybean	nucleus	31.27	12.45
Zm00001d009013_P001	Maize	nucleus	26.12	12.44
Zm00001d033407_P001	Maize	nucleus	15.12	12.36
Zm00001d028314_P001	Maize	nucleus	7.9	12.3
Zm00001d000236_P001	Maize	nucleus, plastid	18.9	9.87
Zm00001d026147_P002	Maize	nucleus	19.59	9.25
Zm00001d019170_P001	Maize	nucleus	19.93	8.61
Bra013264.1-P	Field mustard	nucleus	8.25	8.08
Zm00001d007536_P001	Maize	plastid	16.84	8.07
CDY70012	Canola	nucleus	5.5	5.99

Protein Annotations

MapMan:15.5.32	Gene3D:4.10.280.10	UniProt:A0A060CZ29	ProteinID:AIB04462.1	ncoils:Coil	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638
ProteinID:ONM22912.1	PFAM:PF00010	PFscan:PS50888	PANTHER:PTHR11514	PANTHER:PTHR11514:SF68	SMART:SM00353
SUPFAM:SSF47459	UniParc:UPI000220EFDB	EnsemblPlantsGene:Zm00001d006150	EnsemblPlants:Zm00001d006150_P001	EnsemblPlants:Zm00001d006150_T001	InterPro:bHLH_dom
SEG:seg	:	:	:	:	:

Description

bHLH-transcription factor 95Transcription factor bHLH28

Coordinates

chr2:-:199785894..199786769

Molecular Weight (calculated)

31457.1 Da

IEP (calculated)

5.206

GRAVY (calculated)

-0.414

Length

291 amino acids

Sequence
(BLAST)

001: MDDLLSPCSS FSPPSPPPFF SHAGNPVIEF ASCEVPEQWL LDDVVLDKNE GRYDDVDDLW PVAGRSLSPD SELSEQPLPT QPVPLPPPQQ QQQELTSVTA
101: APAQQQRPGG KRRGRKPGPR PDGPTVSHVE AERQRREKLN RRFCDLRAAV PTVSRMDKAS LLADAAAYIA ELRGRIARLE ADSRRAAAAR WVDPVAAAAS
201: CGADEAVEVR MLGPDVAAVR ATSAAPHAPA RLMSALRSLE LHVQHACVTR VNGMTVQDVV VDVASPLQVQ DDDHDGLRAA LLQRMQDSAA T

Best Arabidopsis Sequence Match ( AT1G32640.1 )
(BLAST)

001: MTDYRLQPTM NLWTTDDNAS MMEAFMSSSD ISTLWPPAST TTTTATTETT PTPAMEIPAQ AGFNQETLQQ RLQALIEGTH EGWTYAIFWQ PSYDFSGASV
101: LGWGDGYYKG EEDKANPRRR SSSPPFSTPA DQEYRKKVLR ELNSLISGGV APSDDAVDEE VTDTEWFFLV SMTQSFACGA GLAGKAFATG NAVWVSGSDQ
201: LSGSGCERAK QGGVFGMHTI ACIPSANGVV EVGSTEPIRQ SSDLINKVRI LFNFDGGAGD LSGLNWNLDP DQGENDPSMW INDPIGTPGS NEPGNGAPSS
301: SSQLFSKSIQ FENGSSSTIT ENPNLDPTPS PVHSQTQNPK FNNTFSRELN FSTSSSTLVK PRSGEILNFG DEGKRSSGNP DPSSYSGQTQ FENKRKRSMV
401: LNEDKVLSFG DKTAGESDHS DLEASVVKEV AVEKRPKKRG RKPANGREEP LNHVEAERQR REKLNQRFYA LRAVVPNVSK MDKASLLGDA IAYINELKSK
501: VVKTESEKLQ IKNQLEEVKL ELAGRKASAS GGDMSSSCSS IKPVGMEIEV KIIGWDAMIR VESSKRNHPA ARLMSALMDL ELEVNHASMS VVNDLMIQQA
601: TVKMGFRIYT QEQLRASLIS KIG

Arabidopsis Description

MYC2ZBF1 [Source:UniProtKB/TrEMBL;Acc:A0A178W7C3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.