Factsheet for Zm00001d019170_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

mitochondrion 3
nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d006236_P002
Zm00001d011645_P001
Zm00001d017616_P001
Zm00001d019170_P001
Zm00001d022628_P001
Zm00001d032024_P001
Zm00001d053220_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G09820.1	Zm00001d011645_P001	AT3G13540.1	15361138
AT4G09820.1	Zm00001d019170_P001	AT4G09820.1	18532977
AT4G09820.1	Zm00001d006236_P002	AT4G38620.1	15361138
AT4G09820.1	Zm00001d022628_P001	AT4G38620.1	15361138
AT4G09820.1	Zm00001d032024_P001	AT4G38620.1	15361138
AT4G09820.1	Zm00001d053220_P001	AT4G38620.1	15361138
AT4G09820.1	Zm00001d017616_P001	AT5G24520.1	15255866

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU88697	Sorghum	nucleus	73.0	72.67
TraesCS1A01G102400.2	Wheat	nucleus, vacuole	46.88	50.48
TraesCS1B01G112900.1	Wheat	nucleus	44.66	47.7
TraesCS1B01G113100.4	Wheat	nucleus	47.33	46.37
GSMUA_Achr3P17620_001	Banana	nucleus	37.69	45.04
HORVU1Hr1G020370.2	Barley	extracellular, nucleus	32.79	43.42
TraesCS1D01G094200.1	Wheat	nucleus	38.87	41.52
GSMUA_Achr6P21490_001	Banana	nucleus	39.02	40.4
KRH71432	Soybean	nucleus	39.02	40.28
AT4G09820.1	Thale cress	nucleus	30.56	39.77
VIT_07s0104g00090.t01	Wine grape	nucleus	40.95	39.66
KRH32008	Soybean	extracellular, plastid	39.02	39.61
CDX86891	Canola	nucleus	29.82	38.58
CDX99505	Canola	nucleus	29.82	38.58
KRH67189	Soybean	cytosol, mitochondrion, nucleus, plastid	32.49	38.29
Bra037887.1-P	Field mustard	nucleus	27.74	37.63
Solyc09g065100.1.1	Tomato	nucleus	36.94	36.62
KRG95511	Soybean	cytosol, mitochondrion, nucleus, plastid	31.9	36.56
PGSC0003DMT400033569	Potato	nucleus	31.9	36.44
Zm00001d000236_P001	Maize	nucleus, plastid	22.7	27.47
Zm00001d026147_P002	Maize	nucleus	25.07	27.44
Zm00001d031717_P001	Maize	nucleus	8.16	21.65
Zm00001d052728_P001	Maize	nucleus	8.75	21.45
PGSC0003DMT400028054	Potato	cytosol	6.23	21.32
Zm00001d028315_P001	Maize	cytosol	4.15	20.74
PGSC0003DMT400028052	Potato	nucleus	6.23	20.69
Zm00001d006150_P001	Maize	nucleus	8.61	19.93
Zm00001d043706_P001	Maize	nucleus	13.8	19.91
Zm00001d021164_P001	Maize	nucleus	8.16	18.97
Zm00001d047017_P001	Maize	nucleus	17.95	17.21
Zm00001d030028_P001	Maize	nucleus	17.66	16.88
Zm00001d028312_P001	Maize	nucleus	8.01	16.88
Zm00001d009013_P001	Maize	nucleus	15.13	16.69
Zm00001d039271_P001	Maize	nucleus	15.13	16.56
Zm00001d030232_P001	Maize	nucleus	7.42	15.62
Zm00001d033848_P004	Maize	nucleus	8.16	15.11
Zm00001d028314_P001	Maize	nucleus	4.01	14.44
Zm00001d026009_P001	Maize	plastid	4.3	14.22
Zm00001d038966_P001	Maize	plastid	4.3	14.22
Zm00001d013370_P001	Maize	plastid	7.86	14.21
Zm00001d033413_P001	Maize	nucleus	6.68	14.15
Zm00001d024781_P001	Maize	nucleus	7.27	13.88
Zm00001d031167_P002	Maize	nucleus	7.86	13.49
Zm00001d003604_P001	Maize	nucleus	6.53	13.1
Zm00001d025462_P001	Maize	nucleus	6.38	13.03
Zm00001d033412_P001	Maize	nucleus	6.82	12.47
Zm00001d033407_P001	Maize	nucleus	6.23	11.8
Zm00001d007536_P001	Maize	plastid	9.79	10.87

Protein Annotations

MapMan:15.5.32	Gene3D:4.10.280.10	UniProt:A0A1D6HW08	ncoils:Coil	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:MYC/MYB_N
ProteinID:ONM52414.1	PFAM:PF00010	PFAM:PF14215	PFscan:PS50888	PANTHER:PTHR11514	PANTHER:PTHR11514:SF93
SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI00084340E5	EnsemblPlantsGene:Zm00001d019170	EnsemblPlants:Zm00001d019170_P001	EnsemblPlants:Zm00001d019170_T001
InterPro:bHLH_dom	SEG:seg	:	:	:	:

Description

intensifier1Transcription factor TT8

Coordinates

chr7:+:20105168..20111095

Molecular Weight (calculated)

73703.7 Da

IEP (calculated)

6.861

GRAVY (calculated)

-0.495

Length

674 amino acids

Sequence
(BLAST)

001: MAAGGSGGEA AQKALQSVAQ STGWTYSLLW RLCPRQGALV WAEGYYNGAI RTRKTTMTTV RQPAGAEDAG DEETALRRSR QLKELYDSLA AGEAAYDGGG
101: GVGDPQQQHQ QQVAVVPPPR RPVAALAPED LTETEWFYLM CASYCFPPAV GLPGEAFVRR AHVWLCGANK ADSKVFSRAI LARTVACIPV DDGVLEIGTT
201: EKVEEDIFLI QHVRNIFVDQ HGAHIMPTTL SGYSTSTPTT QLNHQPFQTK TGISLNLGDE HNSEMEDDDD GRIDLENNTE NDSTRRHLPQ DASVGNELET
301: LNAESSGPML IANLTAQDEY CPLHRFHSED LSSKYLQSSG AEDQAAVAEN AHYIKTVLTI LRFNACRQTQ AASSNIAKTY LALSKNSPFS KWNWKRKGIS
401: SMLIPEGTQQ RMLKSVLLGA PSSSSHRTSS SAPETRGDDG EGTSRSRRGP VPSQTELSAS HVLKERRRRE KLNEGFAMLR SLVPFMDRAS ILGDTIEYVK
501: QLRRRIQELE SRARLVGSNQ KTTMAQPPPP AASTEERGRR QTSGGYLARA GTCSRAAEAS GNSNLGEEPP AAAASDTDTE VQVSIIGSDA LLELRCPHRE
601: GLLLRVMQAL HQELRLEITY VQASSAGDVL LAKLRAKVKE VHGRRSSTTE VKRAIHLIVS SDWNWICEKN PCVA

Best Arabidopsis Sequence Match ( AT1G63650.3 )
(BLAST)

001: MATGENRTVP DNLKKQLAVS VRNIQWSYGI FWSVSASQPG VLEWGDGYYN GDIKTRKTIQ AAEVKIDQLG LERSEQLREL YESLSLAESS ASGSSQVTRR
101: ASAAALSPED LTDTEWYYLV CMSFVFNIGE GIPGGALSNG EPIWLCNAET ADSKVFTRSL LAKSASLQTV VCFPFLGGVL EIGTTEHIKE DMNVIQSVKT
201: LFLEAPPYTT ISTRSDYQEI FDPLSDDKYT PVFITEAFPT TSTSGFEQEP EDHDSFINDG GASQVQSWQF VGEEISNCIH QSLNSSDCVS QTFVGTTGRL
301: ACDPRKSRIQ RLGQIQEQSN HVNMDDDVHY QGVISTIFKT THQLILGPQF QNFDKRSSFT RWKRSSSVKT LGEKSQKMIK KILFEVPLMN KKEELLPDTP
401: EETGNHALSE KKRREKLNER FMTLRSIIPS ISKIDKVSIL DDTIEYLQDL QKRVQELESC RESADTETRI TMMKRKKPDD EEERASANCM NSKRKGSDVN
501: VGEDEPADIG YAGLTDNLRI SSLGNEVVIE LRCAWREGIL LEIMDVISDL NLDSHSVQSS TGDGLLCLTV NCKHKGTKIA TTGMIQEALQ RVAWIC

Arabidopsis Description

BHLH2EGL3 [Source:UniProtKB/TrEMBL;Acc:A0A178W1W8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.