Factsheet for Zm00001d028314_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d028312_P001	Maize	nucleus	94.12	55.0
HORVU4Hr1G065640.6	Barley	nucleus	51.34	28.15
Zm00001d030232_P001	Maize	nucleus	22.46	13.12
Zm00001d033848_P004	Maize	nucleus	21.39	10.99
Zm00001d033412_P001	Maize	nucleus	21.39	10.84
Zm00001d038966_P001	Maize	plastid	11.76	10.78
Zm00001d026009_P001	Maize	plastid	11.76	10.78
Zm00001d013370_P001	Maize	plastid	21.39	10.72
Zm00001d003604_P001	Maize	nucleus	19.25	10.71
Zm00001d025462_P001	Maize	nucleus	18.72	10.61
Zm00001d033407_P001	Maize	nucleus	18.72	9.83
Zm00001d033413_P001	Maize	nucleus	16.58	9.75
Zm00001d024781_P001	Maize	nucleus	16.04	8.5
Zm00001d031167_P002	Maize	nucleus	17.65	8.4
Zm00001d031717_P001	Maize	nucleus	11.23	8.27
Zm00001d052728_P001	Maize	nucleus	11.76	8.0
Zm00001d006150_P001	Maize	nucleus	12.3	7.9
Zm00001d021164_P001	Maize	nucleus	11.76	7.59
Zm00001d043706_P001	Maize	nucleus	13.9	5.57
Zm00001d000236_P001	Maize	nucleus, plastid	15.51	5.21
Zm00001d039271_P001	Maize	nucleus	17.11	5.19
Zm00001d028315_P001	Maize	cytosol	3.74	5.19
Zm00001d009013_P001	Maize	nucleus	16.58	5.07
Zm00001d047017_P001	Maize	nucleus	17.11	4.55
Zm00001d026147_P002	Maize	nucleus	14.97	4.55
Zm00001d030028_P001	Maize	nucleus	17.11	4.54
Zm00001d019170_P001	Maize	nucleus	14.44	4.01
Zm00001d007536_P001	Maize	plastid	12.3	3.79

Protein Annotations

EnsemblPlants:Zm00001d028314_P001	EnsemblPlants:Zm00001d028314_T001	EnsemblPlantsGene:Zm00001d028314	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom
PANTHER:PTHR11514	PANTHER:PTHR11514:SF35	PFAM:PF00010	PFscan:PS50888	ProteinID:ONL95408.1	SEG:seg
SUPFAM:SSF47459	UniParc:UPI000220E9B7	UniProt:A0A1D6JUB2	MapMan:15.5.32	:	:

Description

Transcription factor bHLH18

Coordinates

chr1:+:30348798..30349622

Molecular Weight (calculated)

21425.2 Da

IEP (calculated)

6.922

GRAVY (calculated)

-0.895

Length

187 amino acids

Sequence
(BLAST)

001: MDELNKWRHL HPDPEDELAY MYRQQEEDHA GMQQQHHHFA ERLPEQQQYY TPPPPVAPPT SSSPFLPRLH HTSNFPGFGD PAVPPRLPFR PAKNEPGQPS
101: SSSNRILSFG GQPPSTLNFS GGDWTEAGVE AVQQMPPDRR SRTHWNTQEH VIAERKRREK MQQQFVTLAT IVPDLTKVMH ISCLVVL

Best Arabidopsis Sequence Match ( AT4G37850.1 )
(BLAST)

001: MSILSTRWFS EQEIEENSII QQFHMNSIVG EVQEAQYIFP HSFTTNNDPS YDDLIEMKPP KILETTYISP SSHLPPNSKP HHIHRHSSSR ILSFEDYGSN
101: DMEHEYSPTY LNSIFSPKLE AQVQPHQKSD EFNRKGTKRA QPFSRNQSNA QDHIIAERKR REKLTQRFVA LSALVPGLKK MDKASVLGDA LKHIKYLQER
201: VGELEEQKKE RRLESMVLVK KSKLILDDNN QSFSSSCEDG FSDLDLPEIE VRFSDEDVLI KILCEKQKGH LAKIMAEIEK LHILITNSSV LNFGPTLDIT
301: IIAKKESDFD MTLMDVVKSL RSALSNFI

Arabidopsis Description

BHLH25Transcription factor bHLH25 [Source:UniProtKB/Swiss-Prot;Acc:Q9T072]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.