Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KXG24110 | Sorghum | nucleus | 89.57 | 88.44 |
| Os12t0632600-00 | Rice | nucleus | 52.93 | 59.09 |
| TraesCS5D01G020600.1 | Wheat | nucleus | 53.94 | 56.68 |
| HORVU5Hr1G002090.11 | Barley | nucleus | 54.71 | 56.28 |
| TraesCS5A01G014800.1 | Wheat | nucleus | 54.96 | 54.96 |
| TraesCS5B01G013000.2 | Wheat | nucleus | 51.4 | 53.44 |
| TraesCS7A01G558700.1 | Wheat | nucleus | 42.24 | 51.71 |
| TraesCS7B01G483600.1 | Wheat | nucleus | 40.46 | 49.53 |
| Zm00001d038966_P001 | Maize | plastid | 23.41 | 45.1 |
| Zm00001d026009_P001 | Maize | plastid | 23.41 | 45.1 |
| Zm00001d033412_P001 | Maize | nucleus | 37.15 | 39.57 |
| Zm00001d025462_P001 | Maize | nucleus | 33.08 | 39.39 |
| Zm00001d003604_P001 | Maize | nucleus | 33.59 | 39.29 |
| Zm00001d033413_P001 | Maize | nucleus | 31.3 | 38.68 |
| Zm00001d033407_P001 | Maize | nucleus | 34.61 | 38.2 |
| HORVU7Hr1G120420.2 | Barley | nucleus | 36.9 | 37.56 |
| Zm00001d024781_P001 | Maize | nucleus | 32.06 | 35.69 |
| Zm00001d028315_P001 | Maize | cytosol | 10.69 | 31.11 |
| Zm00001d033848_P004 | Maize | nucleus | 26.72 | 28.85 |
| Zm00001d013370_P001 | Maize | plastid | 25.7 | 27.08 |
| Zm00001d030232_P001 | Maize | nucleus | 19.59 | 24.06 |
| Zm00001d028312_P001 | Maize | nucleus | 18.58 | 22.81 |
| Zm00001d031717_P001 | Maize | nucleus | 11.96 | 18.5 |
| Zm00001d028314_P001 | Maize | nucleus | 8.4 | 17.65 |
| Zm00001d052728_P001 | Maize | nucleus | 12.21 | 17.45 |
| Zm00001d021164_P001 | Maize | nucleus | 12.47 | 16.9 |
| Zm00001d006150_P001 | Maize | nucleus | 12.47 | 16.84 |
| Zm00001d043706_P001 | Maize | nucleus | 13.23 | 11.13 |
| Zm00001d000236_P001 | Maize | nucleus, plastid | 13.49 | 9.52 |
| Zm00001d039271_P001 | Maize | nucleus | 14.76 | 9.42 |
| Zm00001d009013_P001 | Maize | nucleus | 14.5 | 9.33 |
| Zm00001d030028_P001 | Maize | nucleus | 15.78 | 8.79 |
| Zm00001d047017_P001 | Maize | nucleus | 15.52 | 8.68 |
| Zm00001d026147_P002 | Maize | nucleus | 12.72 | 8.12 |
| Zm00001d019170_P001 | Maize | nucleus | 13.49 | 7.86 |
| Zm00001d007536_P001 | Maize | plastid | 8.4 | 5.44 |
Protein Annotations
| EntrezGene:100382434 | MapMan:15.5.32 | MapMan:25.4.1.7 | Gene3D:4.10.280.10 | EMBL:BT064340 | UniProt:C0P7S1 |
| ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf |
| InterPro:IPR011598 | InterPro:IPR036638 | EMBL:KJ726883 | ProteinID:ONM02270.1 | PFAM:PF00010 | PFscan:PS50888 |
| PANTHER:PTHR23042 | PANTHER:PTHR23042:SF74 | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI00019490C1 | EnsemblPlantsGene:Zm00001d031167 |
| EnsemblPlants:Zm00001d031167_P002 | EnsemblPlants:Zm00001d031167_T002 | InterPro:bHLH_dom | SEG:seg | : | : |
Description
bHLH-transcription factor 115Transcription factor bHLH28
Coordinates
chr1:-:180398895..180403600
Molecular Weight (calculated)
40820.7 Da
IEP (calculated)
6.656
GRAVY (calculated)
-0.352
Length
393 amino acids
Sequence
(BLAST)
(BLAST)
001: MMDRHMEDDS STFLQWAMNH LQHPAAATAV SAAYQQQDGG AGVGVRISGG AGDQEDSAAA FPSLQALRAS QPQAVPGSVR VRNLTVQVAD YGLTNSSSSG
101: DSPGAAMDHD AAAGWSPHTA RSRTTGLGGG SNSRPVSWNF SAASAQPADD RGAVGVALPD APAAVARAQQ RAASSAGRRG GGAGPSTAAA PASSPGPVQD
201: HIIAERRRRE KINQRFIELS TVIPGLKKMD KATILGDAVK YVRELQEKVK GLEEEGGAGG SGGIQSAVLV KKQLPPEDDA MASSHGGSGD HGGDGGGMPL
301: PEIEARLSER SVLLLRIHCY SARGLLVRVI SEVEQMQLSI THTNVMPFPA STAIITITAK VEDGFNATVD EIVRRINSAL HQHYSSSSEE TRG
101: DSPGAAMDHD AAAGWSPHTA RSRTTGLGGG SNSRPVSWNF SAASAQPADD RGAVGVALPD APAAVARAQQ RAASSAGRRG GGAGPSTAAA PASSPGPVQD
201: HIIAERRRRE KINQRFIELS TVIPGLKKMD KATILGDAVK YVRELQEKVK GLEEEGGAGG SGGIQSAVLV KKQLPPEDDA MASSHGGSGD HGGDGGGMPL
301: PEIEARLSER SVLLLRIHCY SARGLLVRVI SEVEQMQLSI THTNVMPFPA STAIITITAK VEDGFNATVD EIVRRINSAL HQHYSSSSEE TRG
001: MSILSTRWFS EQEIEENSII QQFHMNSIVG EVQEAQYIFP HSFTTNNDPS YDDLIEMKPP KILETTYISP SSHLPPNSKP HHIHRHSSSR ILSFEDYGSN
101: DMEHEYSPTY LNSIFSPKLE AQVQPHQKSD EFNRKGTKRA QPFSRNQSNA QDHIIAERKR REKLTQRFVA LSALVPGLKK MDKASVLGDA LKHIKYLQER
201: VGELEEQKKE RRLESMVLVK KSKLILDDNN QSFSSSCEDG FSDLDLPEIE VRFSDEDVLI KILCEKQKGH LAKIMAEIEK LHILITNSSV LNFGPTLDIT
301: IIAKKESDFD MTLMDVVKSL RSALSNFI
101: DMEHEYSPTY LNSIFSPKLE AQVQPHQKSD EFNRKGTKRA QPFSRNQSNA QDHIIAERKR REKLTQRFVA LSALVPGLKK MDKASVLGDA LKHIKYLQER
201: VGELEEQKKE RRLESMVLVK KSKLILDDNN QSFSSSCEDG FSDLDLPEIE VRFSDEDVLI KILCEKQKGH LAKIMAEIEK LHILITNSSV LNFGPTLDIT
301: IIAKKESDFD MTLMDVVKSL RSALSNFI
Arabidopsis Description
BHLH25Transcription factor bHLH25 [Source:UniProtKB/Swiss-Prot;Acc:Q9T072]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.