Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G020600.1 | Wheat | nucleus | 87.79 | 92.25 |
| TraesCS5B01G013000.2 | Wheat | nucleus | 83.72 | 87.04 |
| HORVU5Hr1G002090.11 | Barley | nucleus | 84.48 | 86.91 |
| Os12t0632600-00 | Rice | nucleus | 50.64 | 56.53 |
| TraesCS7A01G558700.1 | Wheat | nucleus | 46.06 | 56.39 |
| Zm00001d031167_P002 | Maize | nucleus | 54.96 | 54.96 |
| KXG24110 | Sorghum | nucleus | 54.2 | 53.52 |
| TraesCS4A01G292800.1 | Wheat | nucleus | 40.46 | 43.21 |
| TraesCS4A01G354100.1 | Wheat | nucleus | 34.86 | 42.15 |
| TraesCS4A01G292700.1 | Wheat | nucleus | 38.17 | 41.78 |
| TraesCS3A01G019000.1 | Wheat | nucleus | 32.82 | 40.44 |
| TraesCS4A01G408800.1 | Wheat | nucleus | 39.44 | 40.36 |
| TraesCS4A01G408700.1 | Wheat | nucleus | 27.48 | 40.0 |
| TraesCS3A01G019100.1 | Wheat | nucleus | 29.01 | 35.85 |
| TraesCS4A01G257900.2 | Wheat | nucleus | 27.48 | 28.65 |
| TraesCS5A01G505100.1 | Wheat | nucleus | 21.63 | 28.43 |
| TraesCS5A01G555200.1 | Wheat | nucleus | 22.14 | 27.97 |
| TraesCS4A01G059100.1 | Wheat | nucleus | 22.14 | 26.2 |
| TraesCS1A01G369200.1 | Wheat | nucleus | 9.41 | 18.69 |
| TraesCS2A01G448500.1 | Wheat | nucleus | 11.7 | 17.97 |
| TraesCS5A01G306400.1 | Wheat | nucleus | 9.92 | 17.49 |
| TraesCS5A01G306200.1 | Wheat | nucleus | 12.21 | 17.2 |
| TraesCS5A01G306700.1 | Wheat | peroxisome | 11.96 | 17.15 |
| TraesCS5A01G555300.1 | Wheat | nucleus | 10.69 | 17.14 |
| TraesCS5A01G306600.1 | Wheat | nucleus | 11.7 | 16.73 |
| TraesCS5A01G306500.1 | Wheat | nucleus | 11.45 | 16.01 |
| TraesCS3A01G252900.1 | Wheat | nucleus | 13.23 | 11.33 |
| TraesCS2A01G409600.2 | Wheat | nucleus, plastid | 14.76 | 10.39 |
| TraesCS2A01G409400.1 | Wheat | nucleus | 14.76 | 10.21 |
| TraesCS5A01G489500.1 | Wheat | nucleus | 14.5 | 10.0 |
| TraesCS4A01G028900.1 | Wheat | nucleus | 14.76 | 9.72 |
| TraesCS5A01G558500.1 | Wheat | nucleus | 14.25 | 9.57 |
| TraesCS1A01G102400.2 | Wheat | nucleus, vacuole | 14.5 | 9.11 |
| TraesCS3A01G158600.1 | Wheat | nucleus | 14.25 | 9.09 |
| TraesCS1A01G193200.1 | Wheat | nucleus | 16.03 | 9.09 |
Protein Annotations
| MapMan:15.5.32 | MapMan:25.4.1.7 | Gene3D:4.10.280.10 | InterPro:ACT_dom | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR002912 | InterPro:IPR011598 | InterPro:IPR036638 |
| PFAM:PF00010 | PFscan:PS50888 | PFscan:PS51671 | PANTHER:PTHR23042 | PANTHER:PTHR23042:SF74 | SMART:SM00353 |
| SUPFAM:SSF47459 | EnsemblPlantsGene:TraesCS5A01G014800 | EnsemblPlants:TraesCS5A01G014800.1 | InterPro:bHLH_dom | TIGR:cd00083 | SEG:seg |
Description
No Description!
Coordinates
chr5A:-:10197644..10201028
Molecular Weight (calculated)
41466.4 Da
IEP (calculated)
6.806
GRAVY (calculated)
-0.382
Length
393 amino acids
Sequence
(BLAST)
(BLAST)
001: MDDFMQWAMN TLDQQQYHAA AAAAAPPVYG GAGSSSGGSS AGAAFPSLQA LRESTAAGGG VRDLRVQVDH HQPSSWSTSS GDSPGAAMDH DAAAAGPGWS
101: PHTARARTRT TNSSRPMSWN FSAAAASSQA AQLPADIDIS PRPAPAPRGH STPAAGRRSG GSAQGSTAGP SASPGPVQDH IIAERRRREK INQRFIELST
201: VIPNLKKMDK ATILGDAVKY VRELQDKVKT MEDDDSAAAT TTTTIRSAVL VSKKIKAAAD DEGDEDAGES SHGGLPEIEV RVSDEKTVLV RIHCKNARGL
301: LVRVLAEVED LRLAITHTSV MPFPADTAII TITAKVEEGF NSTVEEIVRR LNLSLRQHYG ANNSTIEIVS PRENAKLAAH ASRSALSLDD FIV
101: PHTARARTRT TNSSRPMSWN FSAAAASSQA AQLPADIDIS PRPAPAPRGH STPAAGRRSG GSAQGSTAGP SASPGPVQDH IIAERRRREK INQRFIELST
201: VIPNLKKMDK ATILGDAVKY VRELQDKVKT MEDDDSAAAT TTTTIRSAVL VSKKIKAAAD DEGDEDAGES SHGGLPEIEV RVSDEKTVLV RIHCKNARGL
301: LVRVLAEVED LRLAITHTSV MPFPADTAII TITAKVEEGF NSTVEEIVRR LNLSLRQHYG ANNSTIEIVS PRENAKLAAH ASRSALSLDD FIV
001: MSILSTRWFS EQEIEENSII QQFHMNSIVG EVQEAQYIFP HSFTTNNDPS YDDLIEMKPP KILETTYISP SSHLPPNSKP HHIHRHSSSR ILSFEDYGSN
101: DMEHEYSPTY LNSIFSPKLE AQVQPHQKSD EFNRKGTKRA QPFSRNQSNA QDHIIAERKR REKLTQRFVA LSALVPGLKK MDKASVLGDA LKHIKYLQER
201: VGELEEQKKE RRLESMVLVK KSKLILDDNN QSFSSSCEDG FSDLDLPEIE VRFSDEDVLI KILCEKQKGH LAKIMAEIEK LHILITNSSV LNFGPTLDIT
301: IIAKKESDFD MTLMDVVKSL RSALSNFI
101: DMEHEYSPTY LNSIFSPKLE AQVQPHQKSD EFNRKGTKRA QPFSRNQSNA QDHIIAERKR REKLTQRFVA LSALVPGLKK MDKASVLGDA LKHIKYLQER
201: VGELEEQKKE RRLESMVLVK KSKLILDDNN QSFSSSCEDG FSDLDLPEIE VRFSDEDVLI KILCEKQKGH LAKIMAEIEK LHILITNSSV LNFGPTLDIT
301: IIAKKESDFD MTLMDVVKSL RSALSNFI
Arabidopsis Description
BHLH25Transcription factor bHLH25 [Source:UniProtKB/Swiss-Prot;Acc:Q9T072]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.