Factsheet for TraesCS5A01G555300.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G335200.1	Wheat	nucleus	52.65	52.44
TraesCS4A01G059100.1	Wheat	nucleus	59.59	43.98
TraesCS5A01G555200.1	Wheat	nucleus	55.1	43.41
TraesCS5A01G505100.1	Wheat	nucleus	51.84	42.47
Zm00001d028312_P001	Maize	nucleus	44.9	34.38
KXG39824	Sorghum	nucleus	44.9	33.74
HORVU4Hr1G065640.6	Barley	nucleus	46.12	33.14
Os03t0229100-00	Rice	plastid	37.55	32.17
TraesCS1A01G369200.1	Wheat	nucleus	15.1	18.69
TraesCS5A01G306400.1	Wheat	nucleus	14.29	15.7
TraesCS4A01G408700.1	Wheat	nucleus	17.14	15.56
TraesCS4A01G354100.1	Wheat	nucleus	20.0	15.08
TraesCS4A01G292700.1	Wheat	nucleus	21.63	14.76
TraesCS3A01G019100.1	Wheat	nucleus	18.78	14.47
TraesCS3A01G019000.1	Wheat	nucleus	18.78	14.42
TraesCS5A01G306700.1	Wheat	peroxisome	15.92	14.23
TraesCS2A01G448500.1	Wheat	nucleus	14.69	14.06
TraesCS4A01G257900.2	Wheat	nucleus	21.63	14.06
TraesCS5A01G306600.1	Wheat	nucleus	15.51	13.82
TraesCS4A01G408800.1	Wheat	nucleus	20.82	13.28
TraesCS5A01G306200.1	Wheat	nucleus	15.1	13.26
TraesCS5A01G306500.1	Wheat	nucleus	14.69	12.81
TraesCS4A01G292800.1	Wheat	nucleus	19.18	12.77
TraesCS5A01G014800.1	Wheat	nucleus	17.14	10.69
TraesCS7A01G558700.1	Wheat	nucleus	13.88	10.59
TraesCS3A01G252900.1	Wheat	nucleus	17.14	9.15
TraesCS2A01G409600.2	Wheat	nucleus, plastid	16.33	7.17
TraesCS2A01G409400.1	Wheat	nucleus	15.92	6.87
TraesCS5A01G489500.1	Wheat	nucleus	15.92	6.84
TraesCS5A01G558500.1	Wheat	nucleus	16.33	6.84
TraesCS3A01G158600.1	Wheat	nucleus	17.14	6.82
TraesCS1A01G193200.1	Wheat	nucleus	19.18	6.78
TraesCS1A01G102400.2	Wheat	nucleus, vacuole	17.14	6.71
TraesCS4A01G028900.1	Wheat	nucleus	15.1	6.2

Protein Annotations

EnsemblPlants:TraesCS5A01G555300.1	EnsemblPlantsGene:TraesCS5A01G555300	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom	PANTHER:PTHR31945
PANTHER:PTHR31945:SF11	PFAM:PF00010	PFscan:PS50888	SEG:seg	SMART:SM00353	SUPFAM:SSF47459
TIGR:cd00083	MapMan:15.5.32	:	:	:	:

Description

No Description!

Coordinates

chr5A:-:706705261..706706358

Molecular Weight (calculated)

26620.9 Da

IEP (calculated)

5.676

GRAVY (calculated)

-0.539

Length

245 amino acids

Sequence
(BLAST)

001: MMEQPKQWLT ETEQYEEELA YMYQQEEPLP DHQGQYYTSF YPCRSSNSPS FGGESLNELG QPYPALSPSA NFLSFAAAEA STHNFSGGSY GGLQVQGTRQ
101: QLQAPARQGR ATASAHEHVI AERKRREKLQ RQFVSLATIV PAGVRKVPPL FLFSSFLRSN FIKLGHADKI SLLGSAIDYV KQLEEKVKAL GEQGLLKSPE
201: CTLFESKCSI SAADKDDSAG PSGSGSSSGD SSPVDVEAST RASPS

Best Arabidopsis Sequence Match ( AT4G37850.1 )
(BLAST)

001: MSILSTRWFS EQEIEENSII QQFHMNSIVG EVQEAQYIFP HSFTTNNDPS YDDLIEMKPP KILETTYISP SSHLPPNSKP HHIHRHSSSR ILSFEDYGSN
101: DMEHEYSPTY LNSIFSPKLE AQVQPHQKSD EFNRKGTKRA QPFSRNQSNA QDHIIAERKR REKLTQRFVA LSALVPGLKK MDKASVLGDA LKHIKYLQER
201: VGELEEQKKE RRLESMVLVK KSKLILDDNN QSFSSSCEDG FSDLDLPEIE VRFSDEDVLI KILCEKQKGH LAKIMAEIEK LHILITNSSV LNFGPTLDIT
301: IIAKKESDFD MTLMDVVKSL RSALSNFI

Arabidopsis Description

BHLH25Transcription factor bHLH25 [Source:UniProtKB/Swiss-Prot;Acc:Q9T072]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.