Factsheet for TraesCS5A01G489500.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G409400.1
TraesCS2A01G409600.2
TraesCS2B01G428000.1
TraesCS2D01G406800.1
TraesCS2D01G406900.1
TraesCS2D01G575600.3
TraesCS3A01G046800.1
TraesCS3A01G257800.1
TraesCS3B01G036000.1
TraesCS3B01G290600.1
TraesCS3D01G033100.1
TraesCS3D01G257800.1
TraesCS4B01G397300.1
TraesCS4B01G397400.1
TraesCS4B01G397800.1
TraesCS4D01G224600.1
TraesCS5A01G489500.1
TraesCS5A01G558500.1
TraesCS6A01G259400.1
TraesCS6B01G286700.1
TraesCSU01G029400.1
TraesCSU01G116000.1
TraesCSU01G228400.1
TraesCSU01G237100.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G63650.1	TraesCS2A01G409400.1	AT1G63650.1	12917293
AT1G63650.1	TraesCS2A01G409600.2	AT1G63650.1	12917293
AT1G63650.1	TraesCS2B01G428000.1	AT1G63650.1	12917293
AT1G63650.1	TraesCS2D01G406800.1	AT1G63650.1	12917293
AT1G63650.1	TraesCS2D01G406900.1	AT1G63650.1	12917293
AT1G63650.1	TraesCS2D01G575600.3	AT1G63650.1	12917293
AT1G63650.1	TraesCS4B01G397300.1	AT1G63650.1	12917293
AT1G63650.1	TraesCS4B01G397400.1	AT1G63650.1	12917293
AT1G63650.1	TraesCS4B01G397800.1	AT1G63650.1	12917293
AT1G63650.1	TraesCS4D01G224600.1	AT1G63650.1	12917293
AT1G63650.1	TraesCS5A01G489500.1	AT1G63650.1	12917293
AT1G63650.1	TraesCS5A01G558500.1	AT1G63650.1	12917293
AT1G63650.1	TraesCSU01G029400.1	AT1G63650.1	12917293
AT1G63650.1	TraesCSU01G116000.1	AT1G63650.1	12917293
AT1G63650.1	TraesCSU01G228400.1	AT1G63650.1	12917293
AT1G63650.1	TraesCSU01G237100.1	AT1G63650.1	12917293
AT1G63650.1	TraesCS3A01G046800.1	AT1G71030.1	15361138
AT1G63650.1	TraesCS3B01G036000.1	AT1G71030.1	15361138
AT1G63650.1	TraesCS3D01G033100.1	AT1G71030.1	15361138
AT1G63650.1	TraesCS3A01G257800.1	AT3G13540.1	15361138
AT1G63650.1	TraesCS3B01G290600.1	AT3G13540.1	15361138
AT1G63650.1	TraesCS3D01G257800.1	AT3G13540.1	15361138
AT1G63650.1	TraesCS6A01G259400.1	AT5G24520.1	12917293
AT1G63650.1	TraesCS6B01G286700.1	AT5G24520.1	12917293

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G558500.1	Wheat	nucleus	96.84	94.36
TraesCS4B01G397300.1	Wheat	nucleus	60.53	84.77
TraesCS2A01G409600.2	Wheat	nucleus, plastid	64.21	65.59
HORVU2Hr1G096810.5	Barley	nucleus	63.33	64.35
TraesCS2A01G409400.1	Wheat	nucleus	63.68	63.91
TraesCS4D01G224600.1	Wheat	nucleus	58.42	59.78
OQU81560	Sorghum	nucleus	54.74	52.97
OQU82120	Sorghum	nucleus	53.68	52.04
OQU82117	Sorghum	nucleus	53.51	51.69
Zm00001d000236_P001	Maize	nucleus, plastid	49.47	50.63
Os01t0577300-00	Rice	cytosol	10.7	50.0
Zm00001d026147_P002	Maize	nucleus	53.51	49.51
GSMUA_Achr11P...	Banana	nucleus	36.14	43.74
Os01t0576100-00	Rice	nucleus	23.51	42.68
OQU82119	Sorghum	nucleus	39.82	41.58
GSMUA_Achr8P11430_001	Banana	nucleus	38.07	39.74
GSMUA_Achr11P...	Banana	nucleus	37.19	38.41
GSMUA_Achr11P...	Banana	nucleus	38.07	36.59
GSMUA_Achr5P20600_001	Banana	nucleus	37.72	36.56
VIT_15s0046g02560.t01	Wine grape	nucleus	39.12	33.84
VIT_02s0025g03450.t01	Wine grape	nucleus	36.49	33.12
KRH41187	Soybean	nucleus	35.09	31.75
Solyc08g081140.2.1	Tomato	nucleus	34.74	31.63
AT1G63650.1	Thale cress	nucleus	32.28	30.87
Bra027653.1-P	Field mustard	nucleus	32.28	30.87
KRH59908	Soybean	nucleus	34.04	30.74
Bra027796.1-P	Field mustard	nucleus	32.11	30.2
KRH65046	Soybean	nucleus	34.04	29.98
Bra025508.1-P	Field mustard	nucleus	32.98	29.89
KRH48144	Soybean	nucleus	33.51	29.38
AT5G41315.2	Thale cress	nucleus	33.16	29.3
AT4G00480.2	Thale cress	nucleus	27.89	27.41
CDX77694	Canola	nucleus	11.75	26.48
TraesCS1A01G102400.2	Wheat	nucleus, vacuole	27.89	25.4
Bra000970.1-P	Field mustard	nucleus	28.25	24.62
PGSC0003DMT400032140	Potato	nucleus	15.09	23.89
TraesCS1A01G369200.1	Wheat	nucleus	7.89	22.73
TraesCS3A01G252900.1	Wheat	nucleus	17.89	22.22
TraesCS2A01G448500.1	Wheat	nucleus	9.47	21.09
Bra037343.1-P	Field mustard	cytosol	25.96	20.82
TraesCS5A01G306600.1	Wheat	nucleus	10.0	20.73
TraesCS5A01G306700.1	Wheat	peroxisome	9.82	20.44
TraesCS5A01G306200.1	Wheat	nucleus	9.47	19.35
TraesCS5A01G505100.1	Wheat	nucleus	10.0	19.06
TraesCS4A01G028900.1	Wheat	nucleus	19.65	18.76
TraesCS5A01G306500.1	Wheat	nucleus	9.12	18.51
TraesCS5A01G306400.1	Wheat	nucleus	7.19	18.39
TraesCS3A01G158600.1	Wheat	nucleus	19.3	17.86
TraesCS5A01G555200.1	Wheat	nucleus	9.65	17.68
TraesCS4A01G059100.1	Wheat	nucleus	10.18	17.47
TraesCS1A01G193200.1	Wheat	nucleus	20.18	16.59
TraesCS7A01G558700.1	Wheat	nucleus	9.3	16.51
TraesCS4A01G354100.1	Wheat	nucleus	9.12	16.0
TraesCS5A01G555300.1	Wheat	nucleus	6.84	15.92
TraesCS4A01G292700.1	Wheat	nucleus	9.82	15.6
TraesCS4A01G408700.1	Wheat	nucleus	7.02	14.81
TraesCS3A01G019000.1	Wheat	nucleus	8.25	14.73
TraesCS4A01G257900.2	Wheat	nucleus	9.65	14.59
TraesCS5A01G014800.1	Wheat	nucleus	10.0	14.5
TraesCS4A01G292800.1	Wheat	nucleus	9.3	14.4
TraesCS3A01G019100.1	Wheat	nucleus	7.89	14.15
TraesCS4A01G408800.1	Wheat	nucleus	8.95	13.28

Protein Annotations

EnsemblPlants:TraesCS5A01G489500.1	EnsemblPlantsGene:TraesCS5A01G489500	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:MYC/MYB_N	InterPro:bHLH_dom
ncoils:Coil	PANTHER:PTHR11514	PANTHER:PTHR11514:SF94	PFAM:PF00010	PFAM:PF14215	PFscan:PS50888
SEG:seg	SMART:SM00353	SUPFAM:SSF47459	TIGR:cd00083	MapMan:15.5.32	:

Description

No Description!

Coordinates

chr5A:-:659338425..659342323

Molecular Weight (calculated)

63158.5 Da

IEP (calculated)

5.090

GRAVY (calculated)

-0.256

Length

570 amino acids

Sequence
(BLAST)

001: MALSAAAPGQ QEPPSGKQLS YQLAAAVRSI NWTYAIFWSM STGLRPPGVL TWKNGFYNGE VKTRKIISST TTELTADDLV LQRSEQLREL YQSLLSGKAD
101: HRAKRPAASL SPEDLGEAEW YYTLSMTYAF RPGQGLPGKS FASNQHVWLY NAQYADTKTF QRALLAKTAP IQTVVCIPFM GGVLKLGTLD LVLEDPNKVN
201: QIGTSLWELP FLACSESELP SSNPSTDEAG NGEVDIVVLE DLDHNVAKGM ISELGEVECM SDVNLDHVTE EVDEFYGLIE ELDVRSLEDN WVMERSFEYT
301: SSLEMAPDMD ARSIDDAIIT LSSFVKGSRP SCFTVWKRSS DCEDVVARVT GESQKLLKKA ISGGAWTARP QESNIKTHVL SERRRREKLN DMFLVLKSMV
401: PSINKMDKAS ILAETITYLR ELEQRVEELE TSRAPSSHPN EAMGRGLHEV VGGKKIKLST GSKRKVLEME REDNDCPSNI VNVTVMDKEV LLEVQCRWKE
501: LLMTRVFDAI KSLRLDIVSV HASTPEGLLD LKIRATQQAS IAPTSKLAVG SAAIAPGMIT EALQKAICIR

Best Arabidopsis Sequence Match ( AT4G00480.1 )
(BLAST)

001: MSLTMADGVE AAAGRSKRQN SLLRKQLALA VRSVQWSYAI FWSSSLTQPG VLEWGEGCYN GDMKKRKKSY ESHYKYGLQK SKELRKLYLS MLEGDSGTTV
101: STTHDNLNDD DDNCHSTSMM LSPDDLSDEE WYYLVSMSYV FSPSQCLPGR ASATGETIWL CNAQYAENKL FSRSLLARSA SIQTVVCFPY LGGVIELGVT
201: ELISEDHNLL RNIKSCLMEI SAHQDNDDEK KMEIKISEEK HQLPLGISDE DLHYKRTIST VLNYSADRSG KNDKNIRHRQ PNIVTSEPGS SFLRWKQCEQ
301: QVSGFVQKKK SQNVLRKILH DVPLMHTKRM FPSQNSGLNQ DDPSDRRKEN EKFSVLRTMV PTVNEVDKES ILNNTIKYLQ ELEARVEELE SCMGSVNFVE
401: RQRKTTENLN DSVLIEETSG NYDDSTKIDD NSGETEQVTV FRDKTHLRVK LKETEVVIEV RCSYRDYIVA DIMETLSNLH MDAFSVRSHT LNKFLTLNLK
501: AKFRGAAVAS VGMIKRELRR VIGDLF

Arabidopsis Description

ATMYC1Basic helix-loop-helix (BHLH) DNA-binding superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4JHC4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.