Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU4Hr1G009440.2 | Barley | nucleus | 83.82 | 92.67 |
| TraesCS4B01G056600.2 | Wheat | nucleus | 87.8 | 88.5 |
| TraesCS4D01G056900.2 | Wheat | nucleus | 87.8 | 88.27 |
| Os03t0725800-01 | Rice | nucleus | 74.01 | 77.72 |
| KXG37671 | Sorghum | nucleus | 72.94 | 77.25 |
| Zm00001d033848_P004 | Maize | nucleus | 71.35 | 73.9 |
| Zm00001d013370_P001 | Maize | plastid | 63.4 | 64.08 |
| GSMUA_Achr8P05170_001 | Banana | nucleus | 30.5 | 57.21 |
| VIT_07s0205g00160.t01 | Wine grape | nucleus | 25.99 | 52.69 |
| VIT_00s0824g00020.t01 | Wine grape | nucleus | 23.87 | 52.63 |
| GSMUA_Achr7P27600_001 | Banana | nucleus | 44.3 | 50.0 |
| GSMUA_Achr3P30620_001 | Banana | nucleus | 42.97 | 50.0 |
| GSMUA_AchrUn_... | Banana | nucleus | 41.91 | 49.07 |
| GSMUA_Achr4P03160_001 | Banana | nucleus | 42.44 | 48.93 |
| GSMUA_Achr3P26180_001 | Banana | nucleus | 37.14 | 47.46 |
| GSMUA_Achr8P26460_001 | Banana | nucleus | 41.64 | 47.29 |
| Solyc01g106460.2.1 | Tomato | nucleus | 27.85 | 43.21 |
| GSMUA_Achr2P08590_001 | Banana | nucleus | 29.71 | 42.11 |
| VIT_03s0088g01240.t01 | Wine grape | nucleus | 37.14 | 40.7 |
| CDX89627 | Canola | nucleus | 28.65 | 40.45 |
| CDX93135 | Canola | nucleus | 28.12 | 39.7 |
| Bra013128.1-P | Field mustard | nucleus | 27.59 | 38.95 |
| KRH42021 | Soybean | nucleus | 18.57 | 35.9 |
| AT4G37850.1 | Thale cress | nucleus | 29.97 | 34.45 |
| KRH49880 | Soybean | nucleus | 29.97 | 34.35 |
| CDX89511 | Canola | nucleus | 28.91 | 33.96 |
| CDX75679 | Canola | nucleus | 30.24 | 33.93 |
| Bra011790.1-P | Field mustard | nucleus | 30.24 | 33.93 |
| CDY25628 | Canola | nucleus | 28.65 | 33.54 |
| Bra030210.1-P | Field mustard | nucleus | 28.65 | 33.54 |
| CDX69336 | Canola | nucleus | 29.97 | 33.43 |
| VIT_07s0205g00180.t01 | Wine grape | nucleus | 31.03 | 33.43 |
| KRH10664 | Soybean | nucleus | 32.63 | 33.33 |
| KRH21680 | Soybean | nucleus, vacuole | 33.16 | 33.24 |
| VIT_00s1314g00010.t01 | Wine grape | nucleus | 29.44 | 33.23 |
| CDY13737 | Canola | nucleus | 25.99 | 33.22 |
| PGSC0003DMT400013074 | Potato | nucleus | 31.03 | 33.14 |
| VIT_07s0205g00190.t01 | Wine grape | nucleus | 29.71 | 33.14 |
| AT2G22750.3 | Thale cress | nucleus | 28.91 | 32.73 |
| TraesCS3A01G019000.1 | Wheat | nucleus | 27.32 | 32.29 |
| Bra039924.1-P | Field mustard | nucleus | 26.79 | 32.27 |
| TraesCS5A01G505100.1 | Wheat | nucleus | 25.46 | 32.11 |
| TraesCS4A01G292700.1 | Wheat | nucleus | 30.5 | 32.03 |
| VIT_00s0927g00010.t01 | Wine grape | nucleus | 19.36 | 32.02 |
| TraesCS4A01G354100.1 | Wheat | nucleus | 27.59 | 32.0 |
| CDX76899 | Canola | nucleus | 27.32 | 31.89 |
| TraesCS3A01G019100.1 | Wheat | nucleus | 26.79 | 31.76 |
| Bra010617.1-P | Field mustard | nucleus | 28.12 | 31.74 |
| CDY49678 | Canola | nucleus | 28.12 | 31.74 |
| CDY72199 | Canola | nucleus | 28.12 | 31.74 |
| PGSC0003DMT400033757 | Potato | nucleus | 16.98 | 30.48 |
| PGSC0003DMT400078698 | Potato | nucleus | 16.18 | 29.19 |
| TraesCS4A01G059100.1 | Wheat | nucleus | 25.46 | 28.92 |
| TraesCS5A01G555200.1 | Wheat | nucleus | 23.61 | 28.62 |
| TraesCS4A01G292800.1 | Wheat | nucleus | 27.59 | 28.26 |
| TraesCS4A01G408700.1 | Wheat | nucleus | 20.16 | 28.15 |
| Solyc06g064590.1.1 | Tomato | nucleus | 20.95 | 28.11 |
| Solyc06g064580.1.1 | Tomato | nucleus | 22.55 | 27.96 |
| Solyc02g091820.1.1 | Tomato | nucleus | 24.14 | 27.91 |
| Solyc02g091810.1.1 | Tomato | nucleus | 23.34 | 27.67 |
| TraesCS5A01G014800.1 | Wheat | nucleus | 28.65 | 27.48 |
| TraesCS7A01G558700.1 | Wheat | nucleus | 23.34 | 27.41 |
| PGSC0003DMT400078699 | Potato | nucleus | 23.34 | 27.24 |
| TraesCS4A01G408800.1 | Wheat | nucleus | 27.59 | 27.08 |
| Solyc05g009640.2.1 | Tomato | cytosol, nucleus, peroxisome | 16.45 | 26.5 |
| VIT_00s0384g00020.t01 | Wine grape | nucleus | 13.0 | 24.87 |
| TraesCS5A01G555300.1 | Wheat | nucleus | 14.06 | 21.63 |
| TraesCS1A01G369200.1 | Wheat | nucleus | 10.61 | 20.2 |
| TraesCS5A01G306400.1 | Wheat | nucleus | 11.67 | 19.73 |
| TraesCS5A01G306200.1 | Wheat | nucleus | 13.79 | 18.64 |
| TraesCS5A01G306700.1 | Wheat | peroxisome | 13.53 | 18.61 |
| TraesCS2A01G448500.1 | Wheat | nucleus | 12.2 | 17.97 |
| TraesCS5A01G306600.1 | Wheat | nucleus | 13.0 | 17.82 |
| TraesCS5A01G306500.1 | Wheat | nucleus | 13.26 | 17.79 |
| TraesCS3A01G252900.1 | Wheat | nucleus | 13.0 | 10.68 |
| TraesCS2A01G409400.1 | Wheat | nucleus | 14.85 | 9.86 |
| TraesCS2A01G409600.2 | Wheat | nucleus, plastid | 14.59 | 9.86 |
| TraesCS3A01G158600.1 | Wheat | nucleus | 15.92 | 9.74 |
| TraesCS5A01G489500.1 | Wheat | nucleus | 14.59 | 9.65 |
| TraesCS5A01G558500.1 | Wheat | nucleus | 14.85 | 9.57 |
| TraesCS4A01G028900.1 | Wheat | nucleus | 14.59 | 9.21 |
| TraesCS1A01G193200.1 | Wheat | nucleus | 16.71 | 9.09 |
| TraesCS1A01G102400.2 | Wheat | nucleus, vacuole | 14.32 | 8.63 |
Protein Annotations
| EnsemblPlants:TraesCS4A01G257900.2 | EnsemblPlantsGene:TraesCS4A01G257900 | Gene3D:4.10.280.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom | PANTHER:PTHR11514 |
| PANTHER:PTHR11514:SF48 | PFAM:PF00010 | PFscan:PS50888 | SEG:seg | SMART:SM00353 | SUPFAM:SSF47459 |
| TIGR:cd00083 | MapMan:15.5.32 | MapMan:25.4.1.7 | : | : | : |
Description
No Description!
Coordinates
chr4A:-:570910815..570912044
Molecular Weight (calculated)
41046.5 Da
IEP (calculated)
5.692
GRAVY (calculated)
-0.319
Length
377 amino acids
Sequence
(BLAST)
(BLAST)
001: MATQWFSNMV MDEPSFFHQW QSDATLEQYT EQQIAVAFGQ GEMEAAALMQ QQQQQQYAAA AAGEHRPRKA AKVNTSWDSC VTEQGSPADS SSPTILSFGG
101: HAHADAFAKA PQAPSAATAY YGAAAPVKPK QEVDAGGVAP FQQVKRSYDA MAAEPARAPS RPAAQNQDHI LAERRRREKL SERFIALSKI VPGLKKMDKA
201: SVLGDAIKYV KTLQEQVKGM EEVARRRPVE SAVLVKKSQL AADEDDGSSC DENFEGADAG LPEIEARMSD RTVLVKIHCE NRRGVLVAAL SELESIDLAI
301: MNTNVLPFTA SSIDITIMAT VSPQSSPLLN SSIIYYSINY MVSLTQSCIN LMQAGEDFSL SVKDIVRKLH QAFKSSP
101: HAHADAFAKA PQAPSAATAY YGAAAPVKPK QEVDAGGVAP FQQVKRSYDA MAAEPARAPS RPAAQNQDHI LAERRRREKL SERFIALSKI VPGLKKMDKA
201: SVLGDAIKYV KTLQEQVKGM EEVARRRPVE SAVLVKKSQL AADEDDGSSC DENFEGADAG LPEIEARMSD RTVLVKIHCE NRRGVLVAAL SELESIDLAI
301: MNTNVLPFTA SSIDITIMAT VSPQSSPLLN SSIIYYSINY MVSLTQSCIN LMQAGEDFSL SVKDIVRKLH QAFKSSP
001: MSILSTRWFS EQEIEENSII QQFHMNSIVG EVQEAQYIFP HSFTTNNDPS YDDLIEMKPP KILETTYISP SSHLPPNSKP HHIHRHSSSR ILSFEDYGSN
101: DMEHEYSPTY LNSIFSPKLE AQVQPHQKSD EFNRKGTKRA QPFSRNQSNA QDHIIAERKR REKLTQRFVA LSALVPGLKK MDKASVLGDA LKHIKYLQER
201: VGELEEQKKE RRLESMVLVK KSKLILDDNN QSFSSSCEDG FSDLDLPEIE VRFSDEDVLI KILCEKQKGH LAKIMAEIEK LHILITNSSV LNFGPTLDIT
301: IIAKKESDFD MTLMDVVKSL RSALSNFI
101: DMEHEYSPTY LNSIFSPKLE AQVQPHQKSD EFNRKGTKRA QPFSRNQSNA QDHIIAERKR REKLTQRFVA LSALVPGLKK MDKASVLGDA LKHIKYLQER
201: VGELEEQKKE RRLESMVLVK KSKLILDDNN QSFSSSCEDG FSDLDLPEIE VRFSDEDVLI KILCEKQKGH LAKIMAEIEK LHILITNSSV LNFGPTLDIT
301: IIAKKESDFD MTLMDVVKSL RSALSNFI
Arabidopsis Description
BHLH25Transcription factor bHLH25 [Source:UniProtKB/Swiss-Prot;Acc:Q9T072]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.