Factsheet for Bra011790.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX75679	Canola	nucleus	100.0	100.0
Bra010617.1-P	Field mustard	nucleus	83.33	83.83
AT4G37850.1	Thale cress	nucleus	77.08	78.96
Bra030210.1-P	Field mustard	nucleus	57.74	60.25
Bra039924.1-P	Field mustard	nucleus	53.87	57.83
GSMUA_Achr8P05170_001	Banana	nucleus	27.08	45.27
GSMUA_Achr7P00800_001	Banana	cytosol	28.27	40.6
GSMUA_Achr3P26180_001	Banana	nucleus	33.93	38.64
Bra013128.1-P	Field mustard	nucleus	30.36	38.2
GSMUA_Achr2P08590_001	Banana	nucleus	30.06	37.97
GSMUA_Achr8P26460_001	Banana	nucleus	36.61	37.05
GSMUA_Achr7P27600_001	Banana	nucleus	36.61	36.83
GSMUA_Achr3P30620_001	Banana	nucleus	35.12	36.42
VIT_00s0927g00010.t01	Wine grape	nucleus	24.4	35.96
GSMUA_AchrUn_...	Banana	nucleus	33.93	35.4
PGSC0003DMT400033757	Potato	nucleus	22.02	35.24
GSMUA_Achr4P03160_001	Banana	nucleus	33.93	34.86
GSMUA_Achr4P23070_001	Banana	nucleus	31.85	34.19
KXG37671	Sorghum	nucleus	35.42	33.43
Solyc05g009640.2.1	Tomato	cytosol, nucleus, peroxisome	23.21	33.33
Bra039926.1-P	Field mustard	nucleus	28.57	33.1
Os03t0725800-01	Rice	nucleus	34.82	32.59
HORVU4Hr1G009440.2	Barley	nucleus	32.44	31.96
Bra039927.1-P	Field mustard	nucleus	30.06	31.96
Zm00001d033848_P004	Maize	nucleus	34.52	31.87
Bra030208.1-P	Field mustard	nucleus	28.57	31.58
Bra030207.1-P	Field mustard	nucleus	30.36	31.29
TraesCS4B01G056600.2	Wheat	nucleus	34.23	30.75
TraesCS4D01G056900.2	Wheat	nucleus	34.23	30.67
Solyc02g091810.1.1	Tomato	nucleus	28.87	30.5
TraesCS4A01G257900.2	Wheat	nucleus	33.93	30.24
PGSC0003DMT400078698	Potato	nucleus	18.75	30.14
Zm00001d013370_P001	Maize	plastid	33.33	30.03
KRH42021	Soybean	nucleus	17.26	29.74
Solyc02g091820.1.1	Tomato	nucleus	28.57	29.45
VIT_00s0384g00020.t01	Wine grape	nucleus	17.26	29.44
PGSC0003DMT400078699	Potato	nucleus	27.98	29.1
Solyc06g064580.1.1	Tomato	nucleus	25.89	28.62
Solyc06g064590.1.1	Tomato	nucleus	23.21	27.76
GSMUA_Achr4P14580_001	Banana	nucleus	22.92	23.19
Bra017527.1-P	Field mustard	nucleus	15.48	23.01
GSMUA_Achr4P03170_001	Banana	nucleus	22.32	21.99
Bra013263.1-P	Field mustard	nucleus	16.07	19.93
Bra024992.1-P	Field mustard	nucleus	13.99	17.34
Bra039279.1-P	Field mustard	nucleus	16.96	12.42
Bra017523.1-P	Field mustard	nucleus	18.45	12.23
Bra010178.1-P	Field mustard	nucleus	21.73	12.17
Bra017520.1-P	Field mustard	nucleus	17.86	12.05
Bra004532.1-P	Field mustard	nucleus	16.67	11.52
Bra024998.1-P	Field mustard	nucleus	19.64	11.38
Bra038458.1-P	Field mustard	nucleus	14.58	10.86
Bra033273.1-P	Field mustard	nucleus	18.45	10.62
Bra012720.1-P	Field mustard	nucleus	14.29	10.53
Bra024993.1-P	Field mustard	nucleus	11.61	10.34
Bra037887.1-P	Field mustard	nucleus	14.29	9.66
Bra027796.1-P	Field mustard	nucleus	16.37	9.08
Bra027653.1-P	Field mustard	nucleus	15.48	8.72
Bra025508.1-P	Field mustard	nucleus	16.07	8.59
Bra000970.1-P	Field mustard	nucleus	16.37	8.41
Bra037343.1-P	Field mustard	cytosol	15.18	7.17
Bra013264.1-P	Field mustard	nucleus	4.17	4.71

Protein Annotations

EnsemblPlants:Bra011790.1	EnsemblPlants:Bra011790.1-P	EnsemblPlantsGene:Bra011790	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom
PANTHER:PTHR23042	PANTHER:PTHR23042:SF100	PFAM:PF00010	PFscan:PS50888	SEG:seg	SMART:SM00353
SUPFAM:SSF47459	UniParc:UPI0002546417	UniProt:M4D5N3	MapMan:15.5.32	MapMan:25.4.1.7	:

Description

AT4G37850 (E=2e-123) | basic helix-loop-helix (bHLH) family protein

Coordinates

chrA01:+:497111..498420

Molecular Weight (calculated)

38169.8 Da

IEP (calculated)

8.005

GRAVY (calculated)

-0.562

Length

336 amino acids

Sequence
(BLAST)

001: MFSTRWFSEQ ELEENSIIQQ YQMNSRVGEI HEAQHNLPHS FSTLMAPTND PSYDDLIEIK PSKILKTTYI SPKLPPPPSF PLPPNSKTYL HHQPSSRILS
101: FENASPNGMD HEYAPTYLDS FINPKVEDGV PPNRMNEPIN RKGTKRAQPL CRNQTNAQDH IIAERKRREK LTQRFVALSA LVPGLKKMDK ASVLGDALKH
201: IKYLQERVGE FEEQKRERRL ESVVLVKKSK LILDDNNQSS SSSCCEDGSS GLELPEIEVK FSDKDVLIKI LCEKQKGHVA KIMAEIEKFN FSITNSSVLP
301: FGPTLDITII AKKESDFDMT LMDVVKSLRS ALSKFL

Best Arabidopsis Sequence Match ( AT4G37850.2 )
(BLAST)

001: MSILSTRWFS EQEIEENSII QQFHMNSIVG EVQEAQYIFP HSFTTNNDPS YDDLIEMKPP KILETTYISP SSHLPPNSKP HHIHRHSSSR ILSFEDYGSN
101: DMEHEYSPTY LNSIFSPKLE AQVQPHQKSD EFNRKGTKRA QPFSRNQSNA QDHIIAERKR REKLTQRFVA LSALVPGLKK MDKASVLGDA LKHIKYLQER
201: VGELEEQKKE RRLESMVLVK KSKLILDDNN QSFSSSCEDG FSDLDLPEIE VRFSDEDVLI KILCEKQKGH LAKIMAEIEK LHILITNSSV LNFGPTLDIT
301: IIAKKESDFD MTLMDVVKSL RSALSNFI

Arabidopsis Description

BHLH25Transcription factor bHLH25 [Source:UniProtKB/Swiss-Prot;Acc:Q9T072]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.