Factsheet for Bra030210.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY25628	Canola	nucleus	98.45	98.45
AT2G22750.3	Thale cress	nucleus	84.16	81.38
Bra039924.1-P	Field mustard	nucleus	78.88	81.15
Bra010617.1-P	Field mustard	nucleus	60.25	58.08
Bra011790.1-P	Field mustard	nucleus	60.25	57.74
GSMUA_Achr8P05170_001	Banana	nucleus	27.64	44.28
GSMUA_Achr7P00800_001	Banana	cytosol	27.64	38.03
GSMUA_Achr2P08590_001	Banana	nucleus	31.06	37.59
GSMUA_Achr3P26180_001	Banana	nucleus	34.16	37.29
GSMUA_Achr8P26460_001	Banana	nucleus	37.89	36.75
GSMUA_Achr7P27600_001	Banana	nucleus	36.96	35.63
GSMUA_Achr3P30620_001	Banana	nucleus	35.71	35.49
GSMUA_AchrUn_...	Banana	nucleus	35.4	35.4
Bra013128.1-P	Field mustard	nucleus	28.88	34.83
VIT_00s0927g00010.t01	Wine grape	nucleus	24.53	34.65
PGSC0003DMT400033757	Potato	nucleus	21.74	33.33
GSMUA_Achr4P03160_001	Banana	nucleus	33.85	33.33
KXG37671	Sorghum	nucleus	36.02	32.58
GSMUA_Achr4P23070_001	Banana	nucleus	31.37	32.27
Zm00001d033848_P004	Maize	nucleus	36.02	31.87
Os03t0725800-01	Rice	nucleus	35.4	31.75
Bra039926.1-P	Field mustard	nucleus	28.26	31.38
Solyc02g091810.1.1	Tomato	nucleus	30.75	31.13
PGSC0003DMT400078698	Potato	nucleus	20.19	31.1
Solyc02g091820.1.1	Tomato	nucleus	31.37	30.98
Bra030208.1-P	Field mustard	nucleus	28.88	30.59
HORVU4Hr1G009440.2	Barley	nucleus	31.99	30.21
Solyc05g009640.2.1	Tomato	cytosol, nucleus, peroxisome	21.74	29.91
KRH42021	Soybean	nucleus	18.01	29.74
Zm00001d013370_P001	Maize	plastid	34.16	29.49
TraesCS4D01G056900.2	Wheat	nucleus	33.85	29.07
TraesCS4B01G056600.2	Wheat	nucleus	33.54	28.88
TraesCS4A01G257900.2	Wheat	nucleus	33.54	28.65
PGSC0003DMT400078699	Potato	nucleus	28.57	28.48
Bra039927.1-P	Field mustard	nucleus	27.95	28.48
VIT_00s0384g00020.t01	Wine grape	nucleus	17.08	27.92
Bra030207.1-P	Field mustard	nucleus	27.95	27.61
Solyc06g064580.1.1	Tomato	nucleus	25.78	27.3
Solyc06g064590.1.1	Tomato	nucleus	23.29	26.69
GSMUA_Achr4P14580_001	Banana	nucleus	24.53	23.8
GSMUA_Achr4P03170_001	Banana	nucleus	24.53	23.17
Bra017527.1-P	Field mustard	nucleus	15.53	22.12
Bra013263.1-P	Field mustard	nucleus	16.46	19.56
Bra024992.1-P	Field mustard	nucleus	14.29	16.97
Bra039279.1-P	Field mustard	nucleus	16.77	11.76
Bra010178.1-P	Field mustard	nucleus	21.43	11.5
Bra017523.1-P	Field mustard	nucleus	18.01	11.44
Bra004532.1-P	Field mustard	nucleus	17.08	11.32
Bra017520.1-P	Field mustard	nucleus	17.39	11.24
Bra024998.1-P	Field mustard	nucleus	20.19	11.21
Bra033273.1-P	Field mustard	nucleus	19.57	10.79
Bra038458.1-P	Field mustard	nucleus	14.91	10.64
Bra012720.1-P	Field mustard	nucleus	14.91	10.53
Bra024993.1-P	Field mustard	nucleus	10.87	9.28
Bra037887.1-P	Field mustard	nucleus	13.66	8.85
Bra027653.1-P	Field mustard	nucleus	15.84	8.56
Bra027796.1-P	Field mustard	nucleus	15.84	8.42
Bra025508.1-P	Field mustard	nucleus	16.15	8.27
Bra000970.1-P	Field mustard	nucleus	13.66	6.73
Bra037343.1-P	Field mustard	cytosol	12.11	5.49
Bra013264.1-P	Field mustard	nucleus	4.66	5.05

Protein Annotations

MapMan:15.5.32	MapMan:25.4.1.7	Gene3D:4.10.280.10	EnsemblPlantsGene:Bra030210	EnsemblPlants:Bra030210.1	EnsemblPlants:Bra030210.1-P
ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf
InterPro:IPR011598	InterPro:IPR036638	UniProt:M4EN40	PFAM:PF00010	PFscan:PS50888	PANTHER:PTHR11514
PANTHER:PTHR11514:SF48	SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI00025443E9	InterPro:bHLH_dom	SEG:seg

Description

AT2G22750 (E=9e-116) | basic helix-loop-helix (bHLH) family protein

Coordinates

chrA04:+:9955739..9958691

Molecular Weight (calculated)

36215.3 Da

IEP (calculated)

7.076

GRAVY (calculated)

-0.495

Length

322 amino acids

Sequence
(BLAST)

001: MATTMNVFST KWSSEMDIEE YSIIHQYHMN SFLGDFPQSL SSLDDTTTCY NFDASCDDDL LEEKPSKILK TTHVLPKLYP CPSYNPPPQS QPPSRILSFE
101: KTGLKVMNHN SPNLIFSPKK EVGSPDLITR GTKRAQPLTR SQSNAQDHIL AERKRREKLT QRFVALSAQI PGLKKMDKAS VLGDAIKHIK YLQESVKEYE
201: EQKKERTMES MVLVKKSQLV LDENYQLSSS SSDGNRDCSS SNLPEMEVRV SGNDVLIKIL CEKQNCNLIK IMSEVEKLGL SITNSSVLPF GPTFDISIIS
301: QKTSNFDMKV EDVVKSLSCG LS

Best Arabidopsis Sequence Match ( AT2G22750.3 )
(BLAST)

001: MATAMNVFST KWSSELDIEE YSIIHQFHMN SLVGDVPQSL SSLDDTTTCY NLDASCNKSL VEERPSKILK TTHISPNLHP FSSSNPPPPK HQPSSRILSF
101: EKTGLHVMNH NSPNLIFSPK DEEIGLPEHK KAELIIRGTK RAQSLTRSQS NAQDHILAER KRREKLTQRF VALSALIPGL KKMDKASVLG DAIKHIKYLQ
201: ESVKEYEEQK KEKTMESVVL VKKSSLVLDE NHQPSSSSSS DGNRNSSSSN LPEIEVRVSG KDVLIKILCE KQKGNVIKIM GEIEKLGLSI TNSNVLPFGP
301: TFDISIIAQK NNNFDMKIED VVKNLSFGLS KLT

Arabidopsis Description

basic helix-loop-helix (bHLH) DNA-binding superfamily protein [Source:TAIR;Acc:AT2G22750]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.