Factsheet for Bra012720.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX90525	Canola	nucleus	97.59	97.59
Bra038458.1-P	Field mustard	nucleus	86.84	87.8
CDY09695	Canola	nucleus	88.16	82.55
AT4G16430.1	Thale cress	nucleus	84.21	82.23
VIT_07s0141g01060.t01	Wine grape	nucleus	51.32	47.66
PGSC0003DMT400051672	Potato	nucleus	48.03	45.91
Solyc06g083980.1.1	Tomato	nucleus	47.37	45.28
KRH19522	Soybean	nucleus	48.46	43.68
KRH32144	Soybean	nucleus	48.25	43.65
Bra039279.1-P	Field mustard	nucleus	37.28	37.04
Bra004532.1-P	Field mustard	nucleus	37.28	34.98
Bra017527.1-P	Field mustard	nucleus	16.67	33.63
TraesCS3B01G288700.1	Wheat	nucleus	32.46	33.41
Os01t0705700-01	Rice	nucleus	33.55	33.26
TraesCS3A01G252900.1	Wheat	nucleus	32.46	32.24
TraesCS3D01G253700.1	Wheat	nucleus	32.46	31.83
HORVU3Hr1G066390.1	Barley	nucleus	32.46	31.83
Zm00001d043706_P001	Maize	nucleus	31.8	31.05
TraesCS3B01G284800.1	Wheat	nucleus	32.02	30.74
Bra033273.1-P	Field mustard	nucleus	38.16	29.79
EES01345	Sorghum	nucleus	31.58	29.75
Bra013263.1-P	Field mustard	nucleus	17.32	29.15
Bra024993.1-P	Field mustard	nucleus	21.93	26.53
Bra024992.1-P	Field mustard	nucleus	15.35	25.83
Bra017520.1-P	Field mustard	nucleus	25.88	23.69
Bra017523.1-P	Field mustard	nucleus	25.0	22.49
Bra010178.1-P	Field mustard	nucleus	29.39	22.33
Bra024998.1-P	Field mustard	nucleus	27.85	21.9
Bra013264.1-P	Field mustard	nucleus	13.16	20.2
Bra013128.1-P	Field mustard	nucleus	9.87	16.85
Bra037887.1-P	Field mustard	nucleus	17.76	16.3
Bra027653.1-P	Field mustard	nucleus	20.83	15.94
Bra027796.1-P	Field mustard	nucleus	20.83	15.68
Bra039924.1-P	Field mustard	nucleus	10.53	15.34
Bra010617.1-P	Field mustard	nucleus	11.18	15.27
Bra025508.1-P	Field mustard	nucleus	20.61	14.94
Bra030210.1-P	Field mustard	nucleus	10.53	14.91
Bra039927.1-P	Field mustard	nucleus	10.31	14.87
Bra030207.1-P	Field mustard	nucleus	10.31	14.42
Bra011790.1-P	Field mustard	nucleus	10.53	14.29
Bra030208.1-P	Field mustard	nucleus	9.21	13.82
Bra039926.1-P	Field mustard	nucleus	8.33	13.1
Bra000970.1-P	Field mustard	nucleus	17.11	11.93
Bra037343.1-P	Field mustard	cytosol	16.67	10.69

Protein Annotations

MapMan:15.5.32	Gene3D:4.10.280.10	EnsemblPlantsGene:Bra012720	EnsemblPlants:Bra012720.1	EnsemblPlants:Bra012720.1-P	ncoils:Coil
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598
InterPro:IPR036638	UniProt:M4D8B0	InterPro:MYC/MYB_N	PFAM:PF00010	PFAM:PF14215	PFscan:PS50888
PANTHER:PTHR11514	PANTHER:PTHR11514:SF53	SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI00025408B5	InterPro:bHLH_dom
SEG:seg	:	:	:	:	:

Description

AT4G16430 (E=4e-210) | basic helix-loop-helix (bHLH) family protein

Coordinates

chrA03:+:22567364..22568734

Molecular Weight (calculated)

51155.5 Da

IEP (calculated)

6.719

GRAVY (calculated)

-0.486

Length

456 amino acids

Sequence
(BLAST)

001: MNVTGESMVG QKFWESQEDR AMVESAIGTE ACDFFISSNT SLPKLLPPPP PTDPNLQQGL RHVVEGSDWD YAVFWLASNV NSSDGCVLIW GDGYYRASQK
101: GNSSDKEDDE TKRRVLRKLH LSFTGSEEDH RLVKSGGLLS DLDMFYLASL YFYFRCDSTK YGPAGTYVSG KPLWAADLPS CLSYYRVRSF LARSAGFKTV
201: LSVPVNCGVV ELGSLKLIPE DKSVVEMVKS VFGGSDFVQA PKIFGRQLSK PRSMSINFSP KMEDESGFSL DAYEVGGSNQ VEAALYLTDE QKPRKRGRKP
301: ANGREEALNH VEAERQRREK LNQRFYALRA VVPNISKMDK ASLLADAITY IIEIQKKRRV YETEKQVMKR RESNQITPAD VDYQQRHDDA VVRVSCPLET
401: HPVSKVVQMF RENEVTPHDT NVAVTEEGVV HTFTVRPQGG CTAEELKDKL LASLSQ

Best Arabidopsis Sequence Match ( AT4G16430.1 )
(BLAST)

001: MGQKFWENQE DRAMVESTIG SEACDFFIST ASASNTALSK LVSPPSDSNL QQGLRHVVEG SDWDYALFWL ASNVNSSDGC VLIWGDGHCR VKKGASGEDY
101: SQQDEIKRRV LRKLHLSFVG SDEDHRLVKS GALTDLDMFY LASLYFSFRC DTNKYGPAGT YVSGKPLWAA DLPSCLSYYR VRSFLARSAG FQTVLSVPVN
201: SGVVELGSLR HIPEDKSVIE MVKSVFGGSD FVQAKEAPKI FGRQLSLGGA KPRSMSINFS PKTEDDTGFS LESYEVQAIG GSNQVYGYEQ GKDETLYLTD
301: EQKPRKRGRK PANGREEALN HVEAERQRRE KLNQRFYALR AVVPNISKMD KASLLADAIT YITDMQKKIR VYETEKQIMK RRESNQITPA EVDYQQRHDD
401: AVVRLSCPLE THPVSKVIQT LRENEVMPHD SNVAITEEGV VHTFTLRPQG GCTAEQLKDK LLASLSQ

Arabidopsis Description

BHLH3Transcription factor bHLH3 [Source:UniProtKB/Swiss-Prot;Acc:O23487]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.