Factsheet for PGSC0003DMT400051672

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g083980.1.1	Tomato	nucleus	98.53	98.53
VIT_07s0141g01060.t01	Wine grape	nucleus	56.18	54.58
KRH32144	Soybean	nucleus	57.02	53.97
KRH19522	Soybean	nucleus	57.23	53.95
Bra038458.1-P	Field mustard	nucleus	48.22	51.0
CDY32242	Canola	nucleus	48.22	51.0
CDY34468	Canola	nucleus	48.01	50.78
AT4G16430.1	Thale cress	nucleus	49.69	50.75
CDX90525	Canola	nucleus	46.12	48.25
Bra012720.1-P	Field mustard	nucleus	45.91	48.03
CDY09695	Canola	nucleus	44.86	43.94
Os01t0705700-01	Rice	nucleus	33.75	35.0
TraesCS3B01G288700.1	Wheat	nucleus	31.87	34.31
Zm00001d043706_P001	Maize	nucleus	33.33	34.05
EES01345	Sorghum	nucleus	34.17	33.68
TraesCS3A01G252900.1	Wheat	nucleus	31.87	33.12
PGSC0003DMT400000652	Potato	nucleus	41.3	32.94
HORVU3Hr1G066390.1	Barley	nucleus	32.08	32.9
TraesCS3B01G284800.1	Wheat	nucleus	32.49	32.63
PGSC0003DMT400018046	Potato	extracellular, nucleus	39.41	32.53
TraesCS3D01G253700.1	Wheat	nucleus	31.66	32.47
PGSC0003DMT400014089	Potato	nucleus	24.11	29.95
PGSC0003DMT400028057	Potato	nucleus	24.32	29.82
PGSC0003DMT400031899	Potato	plastid	24.53	27.15
PGSC0003DMT400028054	Potato	cytosol	10.9	26.4
PGSC0003DMT400047220	Potato	nucleus	24.95	26.33
PGSC0003DMT400014097	Potato	nucleus	24.95	26.04
PGSC0003DMT400028052	Potato	nucleus	10.9	25.62
PGSC0003DMT400015017	Potato	nucleus	24.11	25.22
PGSC0003DMT400002963	Potato	nucleus	30.61	24.41
PGSC0003DMT400045204	Potato	nucleus	31.24	21.47
PGSC0003DMT400078698	Potato	nucleus	8.6	19.62
PGSC0003DMT400033757	Potato	nucleus	8.6	19.52
PGSC0003DMT400013074	Potato	nucleus	11.95	16.15
PGSC0003DMT400078699	Potato	nucleus	10.06	14.86
PGSC0003DMT400033569	Potato	nucleus	18.03	14.58
PGSC0003DMT400032140	Potato	nucleus	9.85	13.06
PGSC0003DMT400078696	Potato	nucleus	9.01	12.39

Protein Annotations

EntrezGene:102587940	MapMan:15.5.32	Gene3D:4.10.280.10	ncoils:Coil	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0008150
GO:GO:0008152	GO:GO:0010629	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638
UniProt:M1BS13	InterPro:MYC/MYB_N	PFAM:PF00010	PFAM:PF14215	EnsemblPlantsGene:PGSC0003DMG400020066	PGSC:PGSC0003DMG400020066
EnsemblPlants:PGSC0003DMT400051672	PFscan:PS50888	PANTHER:PTHR11514	PANTHER:PTHR11514:SF53	SMART:SM00353	SUPFAM:SSF47459
UniParc:UPI00029657F8	RefSeq:XP_006352746.1	InterPro:bHLH_dom	:	:	:

Description

BHLH domain class transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG400020066]

Coordinates

chr6:-:58827640..58830434

Molecular Weight (calculated)

52906.7 Da

IEP (calculated)

7.060

GRAVY (calculated)

-0.475

Length

477 amino acids

Sequence
(BLAST)

001: MAEKFFLKGE DKVNMEGVLG SEAVEFFSWS ASNHMLTEFT SSRGDLGVQQ ALCKIVEGSD WTYAIYWQVA KSKSGKSALI WGDGHCREVK IGQGEGGNDS
101: AHQKMMDGNK KKMVLQKIHT CFGGSEDDNI AAKLESVSDV EVFYLTSMYY IFPFDKPSSP SQSFNSARSI WGSDLKGCLE HFQSRSYLAK LARFETLVFV
201: PLKSGVVELG SVKSIPEDQN LIQMVKTSVV VSNPPQPKAI PKIFGRELSL GGAKSGPISI NFSPKVEEEL SFASDSYEVQ AALGSSQVYG NSSNGYRSDE
301: GEGKLYKEEL DERKPRKRGR KPANGREEAL NHVEAERQRR EKLNQRFYAL RAVVPNISKM DKASLLGDAI AYITDLQARI RVLDAEKEMV GDKQKQQVIP
401: EIDFHQRQDD AVVRVGCPLN AHPVSRVLKT FQEHQVVPQE SNVSLTENGE LVHTFSIRAP GPAAEDLKEK LTAALSK

Best Arabidopsis Sequence Match ( AT4G16430.1 )
(BLAST)

001: MGQKFWENQE DRAMVESTIG SEACDFFIST ASASNTALSK LVSPPSDSNL QQGLRHVVEG SDWDYALFWL ASNVNSSDGC VLIWGDGHCR VKKGASGEDY
101: SQQDEIKRRV LRKLHLSFVG SDEDHRLVKS GALTDLDMFY LASLYFSFRC DTNKYGPAGT YVSGKPLWAA DLPSCLSYYR VRSFLARSAG FQTVLSVPVN
201: SGVVELGSLR HIPEDKSVIE MVKSVFGGSD FVQAKEAPKI FGRQLSLGGA KPRSMSINFS PKTEDDTGFS LESYEVQAIG GSNQVYGYEQ GKDETLYLTD
301: EQKPRKRGRK PANGREEALN HVEAERQRRE KLNQRFYALR AVVPNISKMD KASLLADAIT YITDMQKKIR VYETEKQIMK RRESNQITPA EVDYQQRHDD
401: AVVRLSCPLE THPVSKVIQT LRENEVMPHD SNVAITEEGV VHTFTLRPQG GCTAEQLKDK LLASLSQ

Arabidopsis Description

BHLH3Transcription factor bHLH3 [Source:UniProtKB/Swiss-Prot;Acc:O23487]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.