Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX90525 | Canola | nucleus | 83.16 | 88.82 |
| Bra012720.1-P | Field mustard | nucleus | 82.55 | 88.16 |
| CDY32242 | Canola | nucleus | 77.82 | 84.04 |
| CDY34468 | Canola | nucleus | 77.0 | 83.15 |
| AT4G16430.1 | Thale cress | nucleus | 73.51 | 76.66 |
| VIT_07s0141g01060.t01 | Wine grape | nucleus | 46.82 | 46.44 |
| PGSC0003DMT400051672 | Potato | nucleus | 43.94 | 44.86 |
| Solyc06g083980.1.1 | Tomato | nucleus | 43.53 | 44.44 |
| KRH32144 | Soybean | nucleus | 44.56 | 43.06 |
| KRH19522 | Soybean | nucleus | 44.56 | 42.89 |
| CDX77696 | Canola | nucleus | 8.83 | 35.83 |
| CDY27319 | Canola | nucleus | 31.21 | 34.31 |
| CDY66312 | Canola | nucleus | 31.83 | 33.84 |
| CDX80023 | Canola | nucleus | 32.65 | 32.65 |
| CDY56874 | Canola | nucleus | 32.24 | 31.98 |
| TraesCS3B01G288700.1 | Wheat | nucleus | 28.75 | 31.6 |
| Os01t0705700-01 | Rice | nucleus | 29.57 | 31.3 |
| CDY70013 | Canola | nucleus | 15.81 | 30.56 |
| TraesCS3A01G252900.1 | Wheat | nucleus | 28.75 | 30.5 |
| TraesCS3D01G253700.1 | Wheat | nucleus | 28.54 | 29.89 |
| Zm00001d043706_P001 | Maize | nucleus | 28.34 | 29.55 |
| HORVU3Hr1G066390.1 | Barley | nucleus | 28.13 | 29.46 |
| TraesCS3B01G284800.1 | Wheat | nucleus | 28.34 | 29.05 |
| CDX90021 | Canola | nucleus | 31.42 | 28.33 |
| EES01345 | Sorghum | nucleus | 27.93 | 28.1 |
| CDY70012 | Canola | nucleus | 15.4 | 28.09 |
| CDY58502 | Canola | nucleus | 22.59 | 24.5 |
| CDX73261 | Canola | nucleus | 21.97 | 24.15 |
| CDY26910 | Canola | nucleus | 21.97 | 24.15 |
| CDX77688 | Canola | nucleus | 22.38 | 24.11 |
| CDY33482 | Canola | nucleus | 13.14 | 23.62 |
| CDX77699 | Canola | nucleus | 12.94 | 23.25 |
| CDY03185 | Canola | nucleus | 21.56 | 22.2 |
| CDY45357 | Canola | cytosol, golgi, nucleus | 8.62 | 22.11 |
| CDY03195 | Canola | nucleus | 24.23 | 21.65 |
| CDY03183 | Canola | nucleus | 22.59 | 21.61 |
| CDX78808 | Canola | nucleus | 25.46 | 21.42 |
| CDY59973 | Canola | nucleus | 22.38 | 21.41 |
| CDY44507 | Canola | nucleus | 25.67 | 21.33 |
| CDY35179 | Canola | nucleus | 24.23 | 21.0 |
| CDX77694 | Canola | nucleus | 10.88 | 20.95 |
| CDY35183 | Canola | nucleus | 21.77 | 20.91 |
| CDX84081 | Canola | nucleus | 22.59 | 20.79 |
| CDX86891 | Canola | nucleus | 18.28 | 17.08 |
| CDX99505 | Canola | nucleus | 18.07 | 16.89 |
| CDX89627 | Canola | nucleus | 9.03 | 16.48 |
| CDX93135 | Canola | nucleus | 9.03 | 16.48 |
| CDY25513 | Canola | nucleus | 17.86 | 15.08 |
| CDY39747 | Canola | nucleus | 17.25 | 15.03 |
| CDY58950 | Canola | nucleus | 17.66 | 14.9 |
| CDY34367 | Canola | nucleus | 18.07 | 14.77 |
| CDY25629 | Canola | nucleus | 9.03 | 14.67 |
| CDY13737 | Canola | nucleus | 8.83 | 14.58 |
| CDX76899 | Canola | nucleus | 9.65 | 14.55 |
| CDX89512 | Canola | nucleus | 8.83 | 14.53 |
| CDY08314 | Canola | nucleus | 17.86 | 14.38 |
| CDY49678 | Canola | nucleus | 9.86 | 14.37 |
| CDY72199 | Canola | nucleus | 9.86 | 14.37 |
| CDY25628 | Canola | nucleus | 9.24 | 13.98 |
| CDX89513 | Canola | nucleus | 9.24 | 13.85 |
| CDY13735 | Canola | nucleus | 8.21 | 13.84 |
| CDX89511 | Canola | nucleus | 9.03 | 13.71 |
| CDY52593 | Canola | nucleus | 8.01 | 13.68 |
| CDY52591 | Canola | nucleus | 8.83 | 13.65 |
| CDY07214 | Canola | mitochondrion, nucleus | 14.99 | 13.47 |
| CDY51155 | Canola | mitochondrion, nucleus | 14.99 | 13.47 |
| CDX91907 | Canola | nucleus | 14.78 | 13.24 |
| CDY25630 | Canola | nucleus | 8.83 | 13.23 |
| CDX75679 | Canola | nucleus | 9.03 | 13.1 |
| CDX69336 | Canola | nucleus | 9.03 | 13.02 |
| CDY70506 | Canola | nucleus | 13.96 | 12.73 |
| CDY72121 | Canola | nucleus | 7.6 | 12.01 |
Protein Annotations
| MapMan:15.5.32 | Gene3D:4.10.280.10 | GO:A0A078F5H0 | UniProt:A0A078F5H0 | EnsemblPlants:CDY09695 | ProteinID:CDY09695 |
| ProteinID:CDY09695.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0046983 |
| EnsemblPlantsGene:GSBRNA2T00031364001 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:MYC/MYB_N | PFAM:PF00010 |
| PFAM:PF14215 | PFscan:PS50888 | PANTHER:PTHR11514 | PANTHER:PTHR11514:SF53 | SMART:SM00353 | SUPFAM:SSF47459 |
| UniParc:UPI0004EF0688 | InterPro:bHLH_dom | SEG:seg | : | : | : |
Description
BnaC07g33660DBnaC07g33660D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F5H0]
Coordinates
chrLK031998:-:485264..489058
Molecular Weight (calculated)
54727.9 Da
IEP (calculated)
6.142
GRAVY (calculated)
-0.456
Length
487 amino acids
Sequence
(BLAST)
(BLAST)
001: MIKLFFSLDQ ALNNQIKYFQ ENLKQEIKTL SILSPQKQIK DTNFKTPLPL QLTSVDPQQE TRESMVGQKF WENQEDRAMV ESAIGTEACE FFISSNTSLP
101: KLLPPPPPPP TDPNLQQGLR HVVEGSDWDY AVFWLASNVN SSDGCFLIWG DGHYRATQKG NSSDKEDDET KRRVLSKLHF DVDMFYLASL YFYFRCDSTK
201: YGPAGTYVSG KPLWAADLPS CLSYYRVRSF LARSAGFKTV LSVPVNCGVV ELGSLKLIPE DKSVVEMVKS VFGGSDFVQA PKIFGRQLSL GGSKPRSMSI
301: NFSPKMEDDS GFSLDAYEVG GSNQVEAALK PANGREEALN HVEAERQRRE KLNQRFYALR AVVPNISKMD KASLLADAIT YITDMQKKIR VYETEKQVMK
401: RKESNQITPG DVDYQQRHDD AVVRVSCPLE THPVSNVVQM FRENEVTPHD TNVAVTEEGV VHTFTVRPQG GCTAEELKEK LIASLSQ
101: KLLPPPPPPP TDPNLQQGLR HVVEGSDWDY AVFWLASNVN SSDGCFLIWG DGHYRATQKG NSSDKEDDET KRRVLSKLHF DVDMFYLASL YFYFRCDSTK
201: YGPAGTYVSG KPLWAADLPS CLSYYRVRSF LARSAGFKTV LSVPVNCGVV ELGSLKLIPE DKSVVEMVKS VFGGSDFVQA PKIFGRQLSL GGSKPRSMSI
301: NFSPKMEDDS GFSLDAYEVG GSNQVEAALK PANGREEALN HVEAERQRRE KLNQRFYALR AVVPNISKMD KASLLADAIT YITDMQKKIR VYETEKQVMK
401: RKESNQITPG DVDYQQRHDD AVVRVSCPLE THPVSNVVQM FRENEVTPHD TNVAVTEEGV VHTFTVRPQG GCTAEELKEK LIASLSQ
001: MGQKFWENQE DRAMVESTIG SEACDFFIST ASASNTALSK LVSPPSDSNL QQGLRHVVEG SDWDYALFWL ASNVNSSDGC VLIWGDGHCR VKKGASGEDY
101: SQQDEIKRRV LRKLHLSFVG SDEDHRLVKS GALTDLDMFY LASLYFSFRC DTNKYGPAGT YVSGKPLWAA DLPSCLSYYR VRSFLARSAG FQTVLSVPVN
201: SGVVELGSLR HIPEDKSVIE MVKSVFGGSD FVQAKEAPKI FGRQLSLGGA KPRSMSINFS PKTEDDTGFS LESYEVQAIG GSNQVYGYEQ GKDETLYLTD
301: EQKPRKRGRK PANGREEALN HVEAERQRRE KLNQRFYALR AVVPNISKMD KASLLADAIT YITDMQKKIR VYETEKQIMK RRESNQITPA EVDYQQRHDD
401: AVVRLSCPLE THPVSKVIQT LRENEVMPHD SNVAITEEGV VHTFTLRPQG GCTAEQLKDK LLASLSQ
101: SQQDEIKRRV LRKLHLSFVG SDEDHRLVKS GALTDLDMFY LASLYFSFRC DTNKYGPAGT YVSGKPLWAA DLPSCLSYYR VRSFLARSAG FQTVLSVPVN
201: SGVVELGSLR HIPEDKSVIE MVKSVFGGSD FVQAKEAPKI FGRQLSLGGA KPRSMSINFS PKTEDDTGFS LESYEVQAIG GSNQVYGYEQ GKDETLYLTD
301: EQKPRKRGRK PANGREEALN HVEAERQRRE KLNQRFYALR AVVPNISKMD KASLLADAIT YITDMQKKIR VYETEKQIMK RRESNQITPA EVDYQQRHDD
401: AVVRLSCPLE THPVSKVIQT LRENEVMPHD SNVAITEEGV VHTFTLRPQG GCTAEQLKDK LLASLSQ
Arabidopsis Description
BHLH3Transcription factor bHLH3 [Source:UniProtKB/Swiss-Prot;Acc:O23487]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.