Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX80023 | Canola | nucleus | 92.46 | 93.22 |
| Bra004532.1-P | Field mustard | nucleus | 91.85 | 92.8 |
| CDY66312 | Canola | nucleus | 69.86 | 74.89 |
| CDY27319 | Canola | nucleus | 66.6 | 73.81 |
| AT2G46510.1 | Thale cress | nucleus | 78.62 | 68.2 |
| GSMUA_Achr10P... | Banana | nucleus | 42.97 | 45.97 |
| CDY70012 | Canola | nucleus | 24.85 | 45.69 |
| KRH68922 | Soybean | nucleus | 50.1 | 44.73 |
| VIT_15s0046g00320.t01 | Wine grape | nucleus | 53.56 | 43.54 |
| GSMUA_Achr8P05350_001 | Banana | nucleus | 39.1 | 42.57 |
| GSMUA_AchrUn_... | Banana | cytosol, nucleus, plastid | 41.14 | 42.53 |
| GSMUA_Achr8P26280_001 | Banana | cytosol | 39.31 | 41.68 |
| PGSC0003DMT400000652 | Potato | nucleus | 50.31 | 41.3 |
| PGSC0003DMT400018046 | Potato | extracellular, nucleus | 48.47 | 41.18 |
| CDX90021 | Canola | nucleus | 45.21 | 41.11 |
| GSMUA_Achr1P28110_001 | Banana | nucleus | 41.55 | 41.05 |
| Solyc01g096050.2.1 | Tomato | nucleus | 50.51 | 40.99 |
| KRG97199 | Soybean | nucleus | 51.32 | 40.71 |
| Solyc05g050560.1.1 | Tomato | nucleus | 47.86 | 40.59 |
| KRH06456 | Soybean | nucleus | 48.88 | 38.84 |
| KRH47899 | Soybean | nucleus | 49.08 | 38.5 |
| GSMUA_Achr6P35730_001 | Banana | nucleus | 38.49 | 38.49 |
| CDY70013 | Canola | nucleus | 19.76 | 38.49 |
| CDX77696 | Canola | nucleus | 9.37 | 38.33 |
| CDX90525 | Canola | nucleus | 35.03 | 37.72 |
| CDY32242 | Canola | nucleus | 34.22 | 37.25 |
| GSMUA_Achr7P14640_001 | Banana | nucleus | 36.66 | 37.19 |
| CDY34468 | Canola | nucleus | 33.6 | 36.59 |
| GSMUA_Achr1P14370_001 | Banana | cytosol, nucleus, plastid | 41.96 | 35.83 |
| TraesCS4D01G275500.1 | Wheat | nucleus | 41.75 | 34.28 |
| Zm00001d009013_P001 | Maize | nucleus | 42.57 | 34.21 |
| TraesCS4A01G028900.1 | Wheat | nucleus | 41.55 | 34.17 |
| TraesCS4B01G276900.1 | Wheat | nucleus | 41.34 | 33.95 |
| Zm00001d039271_P001 | Maize | nucleus | 42.57 | 33.93 |
| Os01t0235700-01 | Rice | nucleus | 42.36 | 33.71 |
| EER99993 | Sorghum | nucleus | 41.96 | 33.12 |
| TraesCS3A01G158600.1 | Wheat | nucleus | 41.14 | 32.79 |
| TraesCS3B01G185400.1 | Wheat | nucleus | 41.34 | 32.48 |
| TraesCS3D01G166300.2 | Wheat | nucleus | 41.34 | 32.48 |
| CDY09695 | Canola | nucleus | 31.98 | 32.24 |
| CDY58502 | Canola | nucleus | 29.12 | 31.85 |
| CDX77688 | Canola | nucleus | 29.12 | 31.64 |
| EES19274 | Sorghum | nucleus | 37.47 | 31.35 |
| CDY45357 | Canola | cytosol, golgi, nucleus | 11.0 | 28.42 |
| CDY26910 | Canola | nucleus | 25.25 | 27.99 |
| CDX73261 | Canola | nucleus | 25.25 | 27.99 |
| CDY03195 | Canola | nucleus | 30.75 | 27.71 |
| CDY03185 | Canola | nucleus | 26.48 | 27.48 |
| CDY44507 | Canola | nucleus | 32.38 | 27.13 |
| CDX78808 | Canola | nucleus | 31.77 | 26.94 |
| CDY35179 | Canola | nucleus | 30.75 | 26.87 |
| HORVU3Hr1G057280.2 | Barley | nucleus | 41.75 | 26.73 |
| CDX84081 | Canola | nucleus | 28.51 | 26.46 |
| CDY35183 | Canola | nucleus | 26.88 | 26.04 |
| CDY03183 | Canola | nucleus | 26.88 | 25.93 |
| CDY59973 | Canola | nucleus | 26.88 | 25.93 |
| CDX77694 | Canola | nucleus | 13.24 | 25.69 |
| CDY33482 | Canola | nucleus | 13.65 | 24.72 |
| CDX77699 | Canola | nucleus | 13.65 | 24.72 |
| Zm00001d007536_P001 | Maize | plastid | 28.51 | 23.06 |
| CDX93135 | Canola | nucleus | 11.0 | 20.22 |
| CDX89627 | Canola | nucleus | 11.0 | 20.22 |
| CDX99505 | Canola | nucleus | 20.37 | 19.19 |
| CDX86891 | Canola | nucleus | 20.37 | 19.19 |
| CDY13737 | Canola | nucleus | 11.41 | 18.98 |
| CDY25513 | Canola | nucleus | 22.2 | 18.89 |
| CDX76899 | Canola | nucleus | 12.42 | 18.89 |
| CDY39747 | Canola | nucleus | 20.77 | 18.25 |
| CDY34367 | Canola | nucleus | 21.79 | 17.95 |
| CDY58950 | Canola | nucleus | 20.98 | 17.85 |
| CDY25628 | Canola | nucleus | 11.61 | 17.7 |
| CDY08314 | Canola | nucleus | 21.79 | 17.69 |
| CDX75679 | Canola | nucleus | 12.02 | 17.56 |
| CDX69336 | Canola | nucleus | 12.02 | 17.46 |
| CDX89511 | Canola | nucleus | 11.41 | 17.45 |
| CDY72199 | Canola | nucleus | 11.81 | 17.37 |
| CDY49678 | Canola | nucleus | 11.81 | 17.37 |
| CDX91907 | Canola | nucleus | 18.33 | 16.54 |
| CDY70506 | Canola | nucleus | 17.72 | 16.29 |
| CDY72121 | Canola | nucleus | 10.18 | 16.23 |
| CDY07214 | Canola | mitochondrion, nucleus | 17.72 | 16.05 |
| CDY13735 | Canola | nucleus | 9.37 | 15.92 |
| CDX89513 | Canola | nucleus | 10.39 | 15.69 |
| CDY52591 | Canola | nucleus | 9.98 | 15.56 |
| CDX89512 | Canola | nucleus | 9.37 | 15.54 |
| CDY51155 | Canola | mitochondrion, nucleus | 17.11 | 15.5 |
| CDY25630 | Canola | nucleus | 10.18 | 15.38 |
| CDY52593 | Canola | nucleus | 8.76 | 15.09 |
| CDY25629 | Canola | nucleus | 9.16 | 15.0 |
Protein Annotations
| MapMan:15.5.32 | MapMan:25.4.1.7 | Gene3D:4.10.280.10 | GO:A0A078J3A8 | UniProt:A0A078J3A8 | EnsemblPlants:CDY56874 |
| ProteinID:CDY56874 | ProteinID:CDY56874.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0046983 | EnsemblPlantsGene:GSBRNA2T00020213001 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:MYC/MYB_N |
| PFAM:PF00010 | PFAM:PF14215 | PFscan:PS50888 | PANTHER:PTHR11514 | PANTHER:PTHR11514:SF69 | SMART:SM00353 |
| SUPFAM:SSF47459 | UniParc:UPI0004EE420B | InterPro:bHLH_dom | SEG:seg | : | : |
Description
BnaC04g52120DBnaC04g52120D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J3A8]
Coordinates
chrLK033526:-:12592..14106
Molecular Weight (calculated)
54795.7 Da
IEP (calculated)
5.548
GRAVY (calculated)
-0.435
Length
491 amino acids
Sequence
(BLAST)
(BLAST)
001: MNTSDVVGWE DEDTRSMASA VLGNSASDFL TANSNSNQNL FLVMGTDDGL NEKLSRLVDS PNPESFSWNY AVFWQQTVSR SGQQVLAWGD GCCREPKEEE
101: SMAYNLEEEM RWQYMRKRVL QKLHRMFGGS DEDDYALNLE NVTATEMFFL ASMYFFFNHG EGGPGRCFAS GRHVWLSDAV GSDYCFRSFM VKSAGIRTVV
201: MVPTDAGVLE LGSVWSLPEN VELVRSVQGL FARRVKPPNM SGGKIHKLFG QELNSSHHNN NGSTIGYTSQ EIDVKVQENV NVVVVDDKNH KVMKTSCNEK
301: RPASLLPEGV SVVEEKRPRK RGRKPANGRE EALNHVEAER QRREKLNQRF YALRAVVPNI SKMDKASLLG DAISYIKELQ ERVKIIEAEA SQEVVDVQAG
401: EEEVVVRVVS PLESHPASRI IQAMRNSEVV SVMESKLSLA EETLFHTFVV KNNNGSDPLT KEKVIAAAYP QTGLTQQLLL PSSSSQVSGD I
101: SMAYNLEEEM RWQYMRKRVL QKLHRMFGGS DEDDYALNLE NVTATEMFFL ASMYFFFNHG EGGPGRCFAS GRHVWLSDAV GSDYCFRSFM VKSAGIRTVV
201: MVPTDAGVLE LGSVWSLPEN VELVRSVQGL FARRVKPPNM SGGKIHKLFG QELNSSHHNN NGSTIGYTSQ EIDVKVQENV NVVVVDDKNH KVMKTSCNEK
301: RPASLLPEGV SVVEEKRPRK RGRKPANGRE EALNHVEAER QRREKLNQRF YALRAVVPNI SKMDKASLLG DAISYIKELQ ERVKIIEAEA SQEVVDVQAG
401: EEEVVVRVVS PLESHPASRI IQAMRNSEVV SVMESKLSLA EETLFHTFVV KNNNGSDPLT KEKVIAAAYP QTGLTQQLLL PSSSSQVSGD I
001: MNMSDLGWDD EDKSVVSAVL GHLASDFLRA NSNSNQNLFL VMGTDDTLNK KLSSLVDWPN SENFSWNYAI FWQQTMSRSG QQVLGWGDGC CREPNEEEES
101: KVVRSYNFNN MGAEEETWQD MRKRVLQKLH RLFGGSDEDN YALSLEKVTA TEIFFLASMY FFFNHGEGGP GRCYSSGKHV WLSDAVNSES DYCFRSFMAK
201: SAGIRTIVMV PTDAGVLELG SVWSLPENIG LVKSVQALFM RRVTQPVMVT SNTNMTGGIH KLFGQDLSGA HAYPKKLEVR RNLDERFTPQ SWEGYNNNKG
301: PTFGYTPQRD DVKVLENVNM VVDNNNYKTQ IEFAGSSVAA SSNPSTNTQQ EKSESCTEKR PVSLLAGAGI VSVVDEKRPR KRGRKPANGR EEPLNHVEAE
401: RQRREKLNQR FYALRSVVPN ISKMDKASLL GDAISYIKEL QEKVKIMEDE RVGTDKSLSE SNTITVEESP EVDIQAMNEE VVVRVISPLD SHPASRIIQA
501: MRNSNVSLME AKLSLAEDTM FHTFVIKSNN GSDPLTKEKL IAAFYPETSS TQPPLPSSSS QVSGDI
101: KVVRSYNFNN MGAEEETWQD MRKRVLQKLH RLFGGSDEDN YALSLEKVTA TEIFFLASMY FFFNHGEGGP GRCYSSGKHV WLSDAVNSES DYCFRSFMAK
201: SAGIRTIVMV PTDAGVLELG SVWSLPENIG LVKSVQALFM RRVTQPVMVT SNTNMTGGIH KLFGQDLSGA HAYPKKLEVR RNLDERFTPQ SWEGYNNNKG
301: PTFGYTPQRD DVKVLENVNM VVDNNNYKTQ IEFAGSSVAA SSNPSTNTQQ EKSESCTEKR PVSLLAGAGI VSVVDEKRPR KRGRKPANGR EEPLNHVEAE
401: RQRREKLNQR FYALRSVVPN ISKMDKASLL GDAISYIKEL QEKVKIMEDE RVGTDKSLSE SNTITVEESP EVDIQAMNEE VVVRVISPLD SHPASRIIQA
501: MRNSNVSLME AKLSLAEDTM FHTFVIKSNN GSDPLTKEKL IAAFYPETSS TQPPLPSSSS QVSGDI
Arabidopsis Description
AIBTranscription factor ABA-INDUCIBLE bHLH-TYPE [Source:UniProtKB/Swiss-Prot;Acc:Q9ZPY8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.