Factsheet for GSMUA_Achr7P14640_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr1P21870_001
GSMUA_Achr2P21770_001
GSMUA_Achr3P02140_001
GSMUA_Achr3P05920_001
GSMUA_Achr3P10270_001
GSMUA_Achr5P05170_001
GSMUA_Achr5P22110_001
GSMUA_Achr6P31050_001
GSMUA_Achr7P19850_001
GSMUA_Achr8P16780_001
GSMUA_Achr9P14370_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G01260.1	GSMUA_Achr10P...	AT1G19180.1	21798944
AT1G01260.1	GSMUA_Achr11P...	AT1G19180.1	21798944
AT1G01260.1	GSMUA_Achr1P21870_001	AT1G19180.1	21798944
AT1G01260.1	GSMUA_Achr2P21770_001	AT1G19180.1	21798944
AT1G01260.1	GSMUA_Achr3P02140_001	AT1G19180.1	21798944
AT1G01260.1	GSMUA_Achr3P05920_001	AT1G19180.1	21798944
AT1G01260.1	GSMUA_Achr3P10270_001	AT1G19180.1	21798944
AT1G01260.1	GSMUA_Achr5P05170_001	AT1G19180.1	21798944
AT1G01260.1	GSMUA_Achr5P22110_001	AT1G19180.1	21798944
AT1G01260.1	GSMUA_Achr6P31050_001	AT1G19180.1	21798944
AT1G01260.1	GSMUA_Achr7P19850_001	AT1G19180.1	21798944
AT1G01260.1	GSMUA_Achr8P16780_001	AT1G19180.1	21798944
AT1G01260.1	GSMUA_Achr9P14370_001	AT1G19180.1	21798944
AT1G01260.1	GSMUA_AchrUn_...	AT1G19180.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	nucleus	73.97	78.0
GSMUA_Achr8P05350_001	Banana	nucleus	44.63	47.89
GSMUA_Achr8P26280_001	Banana	cytosol	44.83	46.87
TraesCS3A01G158600.1	Wheat	nucleus	56.41	44.32
GSMUA_AchrUn_...	Banana	cytosol, nucleus, plastid	43.18	44.0
EER99993	Sorghum	nucleus	56.41	43.89
TraesCS3D01G166300.2	Wheat	nucleus	56.61	43.84
TraesCS4A01G028900.1	Wheat	nucleus	53.93	43.72
Zm00001d039271_P001	Maize	nucleus	55.58	43.67
TraesCS4B01G276900.1	Wheat	nucleus	53.93	43.65
TraesCS4D01G275500.1	Wheat	nucleus	53.93	43.65
TraesCS3B01G185400.1	Wheat	nucleus	56.2	43.52
Os01t0235700-01	Rice	nucleus	55.37	43.44
Zm00001d009013_P001	Maize	nucleus	54.75	43.37
GSMUA_Achr1P28110_001	Banana	nucleus	43.8	42.66
KRH68922	Soybean	nucleus	48.14	42.36
GSMUA_Achr1P14370_001	Banana	cytosol, nucleus, plastid	49.17	41.39
VIT_15s0046g00320.t01	Wine grape	nucleus	50.62	40.56
CDY27319	Canola	nucleus	36.78	40.18
CDY66312	Canola	nucleus	37.19	39.3
PGSC0003DMT400000652	Potato	nucleus	48.35	39.13
EES19274	Sorghum	nucleus	47.11	38.84
Bra039279.1-P	Field mustard	nucleus	36.78	38.78
Solyc01g096050.2.1	Tomato	nucleus	48.14	38.51
GSMUA_Achr6P35730_001	Banana	nucleus	38.84	38.29
KRG97199	Soybean	nucleus	48.35	37.8
KRH06456	Soybean	nucleus	47.93	37.54
PGSC0003DMT400018046	Potato	extracellular, nucleus	44.42	37.2
Solyc05g050560.1.1	Tomato	nucleus	44.01	36.79
KRH47899	Soybean	nucleus	47.52	36.74
CDY56874	Canola	nucleus	37.19	36.66
Bra004532.1-P	Field mustard	nucleus	36.36	36.21
CDX80023	Canola	nucleus	36.36	36.14
HORVU3Hr1G057280.2	Barley	nucleus	55.99	35.33
CDX90021	Canola	nucleus	37.4	33.52
AT2G46510.1	Thale cress	nucleus	39.05	33.39
AT1G01260.1	Thale cress	nucleus	39.88	32.71
Bra033273.1-P	Field mustard	nucleus	39.26	32.53
GSMUA_Achr1P18910_001	Banana	nucleus	23.55	28.93
Zm00001d007536_P001	Maize	plastid	35.12	28.01
GSMUA_Achr3P00370_001	Banana	plastid	25.0	27.5
GSMUA_Achr7P04720_001	Banana	nucleus	26.45	27.29
GSMUA_Achr11P...	Banana	nucleus	24.79	26.79
GSMUA_Achr2P18140_001	Banana	nucleus	25.21	26.29
GSMUA_Achr10P...	Banana	nucleus	21.49	26.07
GSMUA_Achr9P20820_001	Banana	nucleus	19.63	25.82
GSMUA_Achr4P16980_001	Banana	nucleus	23.55	22.49
GSMUA_Achr8P05170_001	Banana	nucleus	8.88	21.39
GSMUA_AchrUn_...	Banana	cytosol	22.73	21.28
GSMUA_Achr5P18100_001	Banana	nucleus	21.07	20.86
GSMUA_Achr8P14720_001	Banana	nucleus	25.21	20.85
GSMUA_Achr2P08590_001	Banana	nucleus	11.16	20.3
GSMUA_Achr11P...	Banana	nucleus	19.63	20.17
GSMUA_Achr11P...	Banana	nucleus	20.04	20.17
GSMUA_Achr4P03160_001	Banana	nucleus	13.43	19.88
GSMUA_Achr1P08130_001	Banana	mitochondrion	22.52	19.53
GSMUA_Achr8P11430_001	Banana	nucleus	21.49	19.05
GSMUA_Achr7P00800_001	Banana	cytosol	8.88	18.38
GSMUA_Achr3P26180_001	Banana	nucleus	10.95	17.97
GSMUA_Achr7P27600_001	Banana	nucleus	12.4	17.96
GSMUA_Achr11P...	Banana	nucleus	20.25	17.75
GSMUA_Achr3P17620_001	Banana	nucleus	20.66	17.73
GSMUA_Achr3P30620_001	Banana	nucleus	11.78	17.59
GSMUA_Achr11P...	Banana	nucleus	21.28	17.37
GSMUA_Achr4P23070_001	Banana	nucleus	10.95	16.93
GSMUA_AchrUn_...	Banana	nucleus	11.16	16.77
GSMUA_Achr6P21490_001	Banana	nucleus	21.28	15.82
GSMUA_Achr8P26460_001	Banana	nucleus	10.74	15.66
GSMUA_Achr5P20600_001	Banana	nucleus	18.8	15.48
GSMUA_Achr4P14580_001	Banana	nucleus	9.3	13.55
GSMUA_Achr4P03170_001	Banana	nucleus	7.64	10.85

Protein Annotations

MapMan:15.5.32	Gene3D:4.10.280.10	ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0046983	EnsemblPlantsGene:GSMUA_Achr7G14640_001	EnsemblPlants:GSMUA_Achr7P14640_001	EnsemblPlants:GSMUA_Achr7T14640_001	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598
InterPro:IPR036638	UniProt:M0THK1	InterPro:MYC/MYB_N	PFAM:PF00010	PFAM:PF14215	PFscan:PS50888
PANTHER:PTHR11514	PANTHER:PTHR11514:SF47	SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI000295F7F6	InterPro:bHLH_dom
SEG:seg	:	:	:	:	:

Description

Putative Transcription factor bHLH3 [Source:GMGC_GENE;Acc:GSMUA_Achr7G14640_001]

Coordinates

chr7:-:11824894..11827111

Molecular Weight (calculated)

53130.0 Da

IEP (calculated)

5.655

GRAVY (calculated)

-0.172

Length

484 amino acids

Sequence
(BLAST)

001: MSEFSWSEEE RRMAAAVLGP EAFGYLAASR ASSDGLTAAA FSSSAEADLQ RRLLDLVEGP RDRPGLGWNY AIFWQISRAK SGDLVLGWGD GSCRDPRDGA
101: EAAAAAAAAA DNYALRLDQV TDAEMFFLVS MYFSFPRGKG APGRALAAGK HLWILSPSDY CYRGFLAASA GFRTIVVVPF ETGVLELGSV RSLTESPDAL
201: QTIKSVFLED NSWDTQLKSG SRSWMLFPNV RKGMQSFSWN HVRGLNSHQQ QFGNGLIIDF SVGGTSRAGA LIAHIGALEG DHADPANGRE EPLNHVEAER
301: QRREKLNRRF YALRAVVPNI SKMDKASLLG DAIAYITDLQ KRLKEMESER EMFLESGMVD PSTRVCCPEF DVQAQQDEVI VQVSSPLNTH PVSKVFQALK
401: EAEIDVAESK VSGGEDTIQH TFIIKSPGSE QQTKDKICKS VPNKGAELWC SIIINAIIIH LKNLFLSGAF DISIECLSHV IHFF

Best Arabidopsis Sequence Match ( AT1G01260.1 )
(BLAST)

001: MNIGRLVWNE DDKAIVASLL GKRALDYLLS NSVSNANLLM TLGSDENLQN KLSDLVERPN ASNFSWNYAI FWQISRSKAG DLVLCWGDGY CREPKEGEKS
101: EIVRILSMGR EEETHQTMRK RVLQKLHDLF GGSEEENCAL GLDRVTDTEM FLLSSMYFSF PRGEGGPGKC FASAKPVWLS DVVNSGSDYC VRSFLAKSAG
201: IQTVVLVPTD LGVVELGSTS CLPESEDSIL SIRSLFTSSL PPVRAVALPV TVAEKIDDNR TKIFGKDLHN SGFLQHHQHH QQQQQQPPQQ QQHRQFREKL
301: TVRKMDDRAP KRLDAYPNNG NRFMFSNPGT NNNTLLSPTW VQPENYTRPI NVKEVPSTDE FKFLPLQQSS QRLLPPAQMQ IDFSAASSRA SENNSDGEGG
401: GEWADAVGAD ESGNNRPRKR GRRPANGRAE ALNHVEAERQ RREKLNQRFY ALRSVVPNIS KMDKASLLGD AVSYINELHA KLKVMEAERE RLGYSSNPPI
501: SLDSDINVQT SGEDVTVRIN CPLESHPASR IFHAFEESKV EVINSNLEVS QDTVLHTFVV KSEELTKEKL ISALSREQTN SVQSRTSSGR

Arabidopsis Description

BHLH13Transcription factor bHLH13 [Source:UniProtKB/Swiss-Prot;Acc:Q9LNJ5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.