Factsheet for GSMUA_Achr3P00370_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
nucleus 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr7P04720_001	Banana	nucleus	70.23	65.88
GSMUA_Achr11P...	Banana	nucleus	48.18	47.32
GSMUA_Achr2P18140_001	Banana	nucleus	47.5	45.04
GSMUA_Achr4P16980_001	Banana	nucleus	50.23	43.59
GSMUA_AchrUn_...	Banana	cytosol	50.68	43.13
GSMUA_Achr5P18100_001	Banana	nucleus	46.36	41.72
GSMUA_Achr11P...	Banana	nucleus	43.41	39.71
GSMUA_Achr8P14720_001	Banana	nucleus	52.5	39.49
GSMUA_Achr10P...	Banana	nucleus	35.23	38.85
GSMUA_Achr9P20820_001	Banana	nucleus	31.36	37.5
GSMUA_Achr1P18910_001	Banana	nucleus	33.18	37.06
HORVU1Hr1G050560.1	Barley	nucleus	56.59	36.4
TraesCS1B01G208000.1	Wheat	nucleus	56.59	35.93
Zm00001d030028_P001	Maize	nucleus	57.5	35.89
TraesCS1D01G196900.1	Wheat	nucleus	56.59	35.83
KXG39194	Sorghum	nucleus	57.05	35.5
Zm00001d047017_P001	Maize	nucleus	56.14	35.14
Os10t0575000-01	Rice	nucleus	55.23	34.76
TraesCS1A01G193200.1	Wheat	nucleus	54.32	34.49
GSMUA_Achr8P05350_001	Banana	nucleus	30.68	29.93
GSMUA_Achr10P...	Banana	nucleus	30.45	29.19
GSMUA_AchrUn_...	Banana	cytosol, nucleus, plastid	30.68	28.42
GSMUA_Achr8P26280_001	Banana	cytosol	28.86	27.43
GSMUA_Achr1P28110_001	Banana	nucleus	30.68	27.16
GSMUA_Achr6P35730_001	Banana	nucleus	29.32	26.27
GSMUA_Achr1P08130_001	Banana	mitochondrion	33.18	26.16
GSMUA_Achr7P14640_001	Banana	nucleus	27.5	25.0
GSMUA_Achr1P14370_001	Banana	cytosol, nucleus, plastid	29.32	22.43
GSMUA_Achr8P05170_001	Banana	nucleus	9.77	21.39
GSMUA_Achr2P08590_001	Banana	nucleus	11.82	19.55
GSMUA_Achr3P26180_001	Banana	nucleus	12.73	18.98
GSMUA_Achr11P...	Banana	nucleus	20.0	18.68
GSMUA_Achr8P11430_001	Banana	nucleus	22.73	18.32
GSMUA_Achr3P17620_001	Banana	nucleus	23.41	18.26
GSMUA_Achr3P30620_001	Banana	nucleus	13.41	18.21
GSMUA_Achr7P00800_001	Banana	cytosol	9.55	17.95
GSMUA_Achr8P26460_001	Banana	nucleus	13.18	17.47
GSMUA_Achr4P03160_001	Banana	nucleus	12.95	17.43
GSMUA_Achr11P...	Banana	nucleus	21.59	17.21
GSMUA_Achr7P27600_001	Banana	nucleus	12.95	17.07
GSMUA_Achr4P23070_001	Banana	nucleus	12.05	16.93
GSMUA_AchrUn_...	Banana	nucleus	12.27	16.77
GSMUA_Achr6P21490_001	Banana	nucleus	23.86	16.13
GSMUA_Achr11P...	Banana	nucleus	20.68	15.35
GSMUA_Achr4P14580_001	Banana	nucleus	11.36	15.06
GSMUA_Achr5P20600_001	Banana	nucleus	19.32	14.46
GSMUA_Achr4P03170_001	Banana	nucleus	10.0	12.9

Protein Annotations

MapMan:15.5.32	Gene3D:3.30.450.40	Gene3D:4.10.280.10	InterPro:GAF-like_dom_sf	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0046983	EnsemblPlantsGene:GSMUA_Achr3G00370_001	EnsemblPlants:GSMUA_Achr3P00370_001	EnsemblPlants:GSMUA_Achr3T00370_001	InterPro:HLH_DNA-bd_sf
InterPro:IPR011598	InterPro:IPR029016	InterPro:IPR036638	UniProt:M0SAK5	InterPro:MYC/MYB_N	PFAM:PF00010
PFAM:PF14215	PFscan:PS50888	PANTHER:PTHR11514	PANTHER:PTHR11514:SF43	SMART:SM00353	SUPFAM:SSF47459
UniParc:UPI0002966BA1	InterPro:bHLH_dom	SEG:seg	:	:	:

Description

Putative Transcription factor MYC4 [Source:GMGC_GENE;Acc:GSMUA_Achr3G00370_001]

Coordinates

chr3:+:307486..309362

Molecular Weight (calculated)

47542.1 Da

IEP (calculated)

7.999

GRAVY (calculated)

-0.426

Length

440 amino acids

Sequence
(BLAST)

001: MESFLSPFPV PRWPPPPLAH SASSSFSSSS SSSRSTVTSF APPSLNPETL QQRLNALIEG GPENWTYAIF WQSSPAGGAA ALSWGDGYYR SCEEDKRKPA
101: GVGASSTAEQ EHRKRWFFLV SMTQTFAPGA GLPGQVLLSG ETVWVAGEDR LAAAPCERAQ QAWAFGLRTM ACVPMGSGVV ELGSTQDIFH NSEILSKVRL
201: LFGRGRGGGG HATGSLPPPP EQGLTNKSTS RGSDDGGFLP SSTAVAATAP KPEGGGLDSD HSDLEGSARE ATSSATLERE KRPKKRGRKP ANGREVPIDH
301: VEAERQRREK LNQRFYALRS VVPNVSKMDK ASLLADAIAY INELHTKWTT SETGTSGEGE GEVEVEVKLL GREAMIRVQC ERRAHPAARL MVALRELELE
401: VYYANVTVVK ELMIQQATVK MGSRIYNQEQ LTAALFARVA

Best Arabidopsis Sequence Match ( AT4G17880.1 )
(BLAST)

001: MSPTNVQVTD YHLNQSKTDT TNLWSTDDDA SVMEAFIGGG SDHSSLFPPL PPPPLPQVNE DNLQQRLQAL IEGANENWTY AVFWQSSHGF AGEDNNNNNT
101: VLLGWGDGYY KGEEEKSRKK KSNPASAAEQ EHRKRVIREL NSLISGGVGG GDEAGDEEVT DTEWFFLVSM TQSFVKGTGL PGQAFSNSDT IWLSGSNALA
201: GSSCERARQG QIYGLQTMVC VATENGVVEL GSSEIIHQSS DLVDKVDTFF NFNNGGGEFG SWAFNLNPDQ GENDPGLWIS EPNGVDSGLV AAPVMNNGGN
301: DSTSNSDSQP ISKLCNGSSV ENPNPKVLKS CEMVNFKNGI ENGQEEDSSN KKRSPVSNNE EGMLSFTSVL PCDSNHSDLE ASVAKEAESN RVVVEPEKKP
401: RKRGRKPANG REEPLNHVEA ERQRREKLNQ RFYSLRAVVP NVSKMDKASL LGDAISYISE LKSKLQKAES DKEELQKQID VMNKEAGNAK SSVKDRKCLN
501: QESSVLIEME VDVKIIGWDA MIRIQCSKRN HPGAKFMEAL KELDLEVNHA SLSVVNDLMI QQATVKMGNQ FFTQDQLKVA LTEKVGECP

Arabidopsis Description

MYC4Transcription factor MYC4 [Source:UniProtKB/Swiss-Prot;Acc:O49687]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.