Factsheet for HORVU1Hr1G050560.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU2Hr1G031310.9
HORVU2Hr1G112360.1
HORVU4Hr1G087520.3
HORVU5Hr1G060730.3
HORVU5Hr1G062290.6

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G32640.1	HORVU2Hr1G031310.9	AT1G19180.1	18547396
AT1G32640.1	HORVU5Hr1G062290.6	AT1G19180.1	18547396
AT1G32640.1	HORVU4Hr1G087520.3	AT1G48500.1	19309455
AT1G32640.1	HORVU5Hr1G060730.3	AT1G48500.1	19309455
AT1G32640.1	HORVU4Hr1G087520.3	AT3G17860.1	17637675
AT1G32640.1	HORVU5Hr1G060730.3	AT3G17860.1	17637675
AT1G32640.1	HORVU2Hr1G112360.1	AT3G43440.1	19309455

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G208000.1	Wheat	nucleus	98.54	97.26
TraesCS1D01G196900.1	Wheat	nucleus	98.1	96.55
TraesCS1A01G193200.1	Wheat	nucleus	93.27	92.06
Os10t0575000-01	Rice	nucleus	83.48	81.69
KXG39194	Sorghum	nucleus	83.33	80.62
Zm00001d030028_P001	Maize	nucleus	83.04	80.57
Zm00001d047017_P001	Maize	nucleus	80.26	78.09
GSMUA_Achr7P04720_001	Banana	nucleus	40.06	58.42
Bra017527.1-P	Field mustard	nucleus	19.15	57.96
GSMUA_Achr3P00370_001	Banana	plastid	36.4	56.59
VIT_02s0012g01320.t01	Wine grape	nucleus	53.51	55.2
Bra013263.1-P	Field mustard	nucleus	21.49	54.24
Solyc08g005050.2.1	Tomato	nucleus	36.4	53.66
PGSC0003DMT400002963	Potato	nucleus	46.05	52.68
KRH75613	Soybean	nucleus	48.54	52.12
Bra010178.1-P	Field mustard	nucleus	45.32	51.67
Solyc08g076930.1.1	Tomato	nucleus	51.46	51.09
AT1G32640.1	Thale cress	nucleus	46.34	50.88
PGSC0003DMT400045204	Potato	nucleus	51.61	50.86
KRH74418	Soybean	nucleus	47.51	50.62
KRH45440	Soybean	nucleus	48.1	50.31
AT4G17880.1	Thale cress	nucleus	43.27	50.25
Bra024998.1-P	Field mustard	nucleus	40.35	47.59
Bra013264.1-P	Field mustard	nucleus	20.47	47.14
KRH39540	Soybean	nucleus	50.0	46.79
AT5G46760.1	Thale cress	nucleus	40.06	46.28
GSMUA_AchrUn_...	Banana	cytosol	33.77	44.68
Bra017523.1-P	Field mustard	nucleus	32.31	43.59
Bra017520.1-P	Field mustard	nucleus	31.58	43.37
AT5G46830.1	Thale cress	nucleus	31.58	42.27
Bra024992.1-P	Field mustard	nucleus	16.23	40.96
Bra024993.1-P	Field mustard	nucleus	22.51	40.85
VIT_02s0025g02610.t01	Wine grape	nucleus	21.34	40.44
PGSC0003DMT400014097	Potato	nucleus	25.58	38.29
HORVU0Hr1G025420.1	Barley	cytosol, nucleus	9.06	37.8
Solyc10g009290.1.1	Tomato	nucleus	24.56	37.25
PGSC0003DMT400014089	Potato	nucleus	20.91	37.24
VIT_15s0048g02820.t01	Wine grape	nucleus	26.9	37.02
PGSC0003DMT400047220	Potato	nucleus	24.42	36.95
Solyc10g009270.2.1	Tomato	nucleus	21.05	36.64
Solyc01g096370.2.1	Tomato	nucleus	23.98	36.44
PGSC0003DMT400028057	Potato	nucleus	20.61	36.25
PGSC0003DMT400031899	Potato	plastid	22.51	35.73
Solyc08g083170.1.1	Tomato	extracellular	20.18	35.66
KRH47834	Soybean	nucleus	23.83	35.13
KRH06400	Soybean	nucleus	23.83	34.98
Solyc08g008600.2.1	Tomato	nucleus	22.81	34.51
PGSC0003DMT400015017	Potato	nucleus	22.95	34.43
HORVU5Hr1G080040.1	Barley	nucleus	13.45	34.33
HORVU3Hr1G066390.1	Barley	nucleus	22.95	33.76
AT4G00870.1	Thale cress	nucleus, plastid	20.03	32.39
HORVU5Hr1G080080.1	Barley	nucleus, plastid	9.94	32.38
HORVU5Hr1G079900.1	Barley	cytosol	11.99	30.37
HORVU3Hr1G002620.1	Barley	plastid	8.33	24.78
HORVU3Hr1G057280.2	Barley	nucleus	25.88	23.08
HORVU2Hr1G096810.5	Barley	nucleus	17.54	21.39
HORVU4Hr1G003210.1	Barley	nucleus	10.23	19.18
HORVU0Hr1G014300.1	Barley	nucleus	8.92	18.48
HORVU5Hr1G002090.11	Barley	nucleus	9.8	17.54
HORVU4Hr1G009440.2	Barley	nucleus	8.63	17.3
HORVU4Hr1G078880.2	Barley	nucleus	9.06	16.99
HORVU4Hr1G078910.2	Barley	nucleus	9.06	16.71
HORVU1Hr1G020370.2	Barley	extracellular, nucleus	11.4	15.32
HORVU4Hr1G003340.3	Barley	nucleus	9.5	14.04
HORVU7Hr1G120420.2	Barley	nucleus	7.89	13.99
HORVU4Hr1G065640.6	Barley	nucleus	6.87	13.78

Protein Annotations

MapMan:15.5.32	Gene3D:4.10.280.10	EMBL:AK357816	EMBL:AK360465	ncoils:Coil	UniProt:F2D1Q9
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	EnsemblPlantsGene:HORVU1Hr1G050560
EnsemblPlants:HORVU1Hr1G050560.1	InterPro:IPR011598	InterPro:IPR036638	InterPro:MYC/MYB_N	PFAM:PF00010	PFAM:PF14215
PFscan:PS50888	PANTHER:PTHR11514	PANTHER:PTHR11514:SF43	SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI000200520B
InterPro:bHLH_dom	SEG:seg	:	:	:	:

Description

Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2D1Q9]

Coordinates

chrchr1H:-:374864089..374867984

Molecular Weight (calculated)

73906.7 Da

IEP (calculated)

6.471

GRAVY (calculated)

-0.519

Length

684 amino acids

Sequence
(BLAST)

001: MNLWTDDNAS MMEAFMASAD MPAFPWGAAA TPPPPAAVPA FNQDTLQQRL QAIIEGSRET WTYAIFWQSS TDAGASLLGW GDGYYKGCDD ADKRRQQPTP
101: ASAAEQEHRK RVLRELNSLI AGGGAAAPDE AVEEEVTDTE WFFLVSMTQS FPNGMGLPGQ ALFAGQPIWI ATGLASAPCE RARQAYTFGL RTMVCIPLGT
201: GVLELGATEV IFQTTDSLGR IRSLFSLNGG GGGSGSWPPV APPPQEAETD PSVLWLADAP AGDMKESPPS VEISVSKPPP SQPPQIHHFE NGSTSTLTEN
301: PSLSVHAQQP LPQQQAAAAA QRQNQLQLQH QHNQGPFRRE LNFSDFASNP SVTVTPPFFK PESGEILNFG ADSTSRRNPS PAPPAATASL TTAPGSLFSQ
401: HTATVTAPSN DAKNNPKRSM EATSRASNTN HHQTATANEG MLSFSSAPTT RPSTGTGAPA KSESDHSDLE ASVREVESSR VVPPPEEKRP RKRGRKPANG
501: REEPLNHVEA ERQRREKLNQ RFYALRAVVP NVSKMDKASL LGDAISYINE LRGKMTALES DKETLHSQIE ALKKERDARP AAPSSSGMHD NGARCHAVEI
601: EAKILGLEAM IRVQCHKRNH PAAKLMTALR ELDLDVYHAS VSVVKDIMIQ QVAVKMATRV YSQEQLNAAL YGRLAEPGAA MQIR

Best Arabidopsis Sequence Match ( AT1G32640.1 )
(BLAST)

001: MTDYRLQPTM NLWTTDDNAS MMEAFMSSSD ISTLWPPAST TTTTATTETT PTPAMEIPAQ AGFNQETLQQ RLQALIEGTH EGWTYAIFWQ PSYDFSGASV
101: LGWGDGYYKG EEDKANPRRR SSSPPFSTPA DQEYRKKVLR ELNSLISGGV APSDDAVDEE VTDTEWFFLV SMTQSFACGA GLAGKAFATG NAVWVSGSDQ
201: LSGSGCERAK QGGVFGMHTI ACIPSANGVV EVGSTEPIRQ SSDLINKVRI LFNFDGGAGD LSGLNWNLDP DQGENDPSMW INDPIGTPGS NEPGNGAPSS
301: SSQLFSKSIQ FENGSSSTIT ENPNLDPTPS PVHSQTQNPK FNNTFSRELN FSTSSSTLVK PRSGEILNFG DEGKRSSGNP DPSSYSGQTQ FENKRKRSMV
401: LNEDKVLSFG DKTAGESDHS DLEASVVKEV AVEKRPKKRG RKPANGREEP LNHVEAERQR REKLNQRFYA LRAVVPNVSK MDKASLLGDA IAYINELKSK
501: VVKTESEKLQ IKNQLEEVKL ELAGRKASAS GGDMSSSCSS IKPVGMEIEV KIIGWDAMIR VESSKRNHPA ARLMSALMDL ELEVNHASMS VVNDLMIQQA
601: TVKMGFRIYT QEQLRASLIS KIG

Arabidopsis Description

MYC2ZBF1 [Source:UniProtKB/TrEMBL;Acc:A0A178W7C3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.