Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 3
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCSU01G139100.1 | Wheat | nucleus | 52.02 | 50.99 |
| TraesCS4B01G364700.1 | Wheat | nucleus | 52.02 | 50.85 |
| TraesCS5A01G533000.1 | Wheat | nucleus | 51.16 | 49.86 |
| Os08t0428400-01 | Rice | nucleus | 32.08 | 26.0 |
| EES15016 | Sorghum | cytosol | 27.46 | 22.2 |
| Zm00001d050365_P006 | Maize | nucleus | 26.01 | 20.55 |
| HORVU5Hr1G060730.3 | Barley | plastid | 24.28 | 19.58 |
| PGSC0003DMT400081778 | Potato | cytosol | 18.79 | 19.23 |
| Solyc01g005440.2.1 | Tomato | cytosol | 17.05 | 19.09 |
| GSMUA_Achr9P15630_001 | Banana | cytosol | 22.25 | 18.78 |
| CDX95570 | Canola | plastid | 8.09 | 18.67 |
| Solyc03g118540.2.1 | Tomato | cytosol | 17.34 | 18.4 |
| Solyc06g068930.1.1 | Tomato | nucleus | 13.01 | 18.29 |
| VIT_01s0011g05560.t01 | Wine grape | cytosol | 20.23 | 18.23 |
| Bra003947.1-P | Field mustard | cytosol, mitochondrion, plastid | 11.56 | 18.18 |
| PGSC0003DMT400074101 | Potato | nucleus | 13.29 | 18.18 |
| KRH38274 | Soybean | cytosol | 16.47 | 17.87 |
| Bra007937.1-P | Field mustard | nucleus | 12.43 | 17.2 |
| AT1G48500.1 | Thale cress | nucleus | 15.32 | 17.1 |
| GSMUA_Achr5P05900_001 | Banana | nucleus | 20.23 | 16.87 |
| Bra016193.1-P | Field mustard | nucleus | 12.14 | 16.87 |
| GSMUA_Achr7P12530_001 | Banana | nucleus | 19.94 | 16.83 |
| Bra022254.1-P | Field mustard | nucleus | 16.18 | 16.72 |
| PGSC0003DMT400036790 | Potato | cytosol | 18.79 | 16.67 |
| KRH41663 | Soybean | cytosol | 17.05 | 15.99 |
| KRH60357 | Soybean | nucleus | 17.05 | 15.9 |
| VIT_17s0000g02230.t01 | Wine grape | nucleus | 17.63 | 15.4 |
| AT1G70700.3 | Thale cress | cytosol | 12.14 | 15.22 |
| AT3G17860.1 | Thale cress | nucleus | 15.32 | 15.06 |
| KRH39044 | Soybean | nucleus | 16.47 | 14.77 |
| Bra021281.1-P | Field mustard | nucleus | 14.45 | 14.16 |
Protein Annotations
| EnsemblPlants:HORVU4Hr1G087520.3 | EnsemblPlantsGene:HORVU4Hr1G087520 | InterPro:CCT_CS | InterPro:IPR010399 | InterPro:Tify_dom | PANTHER:PTHR33077 |
| PANTHER:PTHR33077:SF3 | PFAM:PF06200 | PFAM:PF09425 | PFscan:PS51320 | SEG:seg | UniParc:UPI000B46A964 |
| UniProt:A0A287Q0J2 | MapMan:35.2 | : | : | : | : |
Description
No Description!
Coordinates
chrchr4H:+:637376692..637378740
Molecular Weight (calculated)
37082.8 Da
IEP (calculated)
10.920
GRAVY (calculated)
-0.495
Length
346 amino acids
Sequence
(BLAST)
(BLAST)
001: MTMKPGSEYP PPPPGLLLRG GAPAAATHRG QLQPIPAPFM SFRPPTADDA STPMAAPHHQ VQLRFHGHGG SSPFHQPPPG RNPNAADSGA STTHQRFTAN
101: SAAYRSAVGI YAPRRIWNPK STLMTMFYNG AVNVFDVPMD KVYIHTVLAS RASVSNLPRP TQIQKSDSQV PTNTTRFAMP DPRNTFANHV SVISNPTASA
201: SQTPTLSRTT PGYQTYTPAP TTHSGVPPSV VPPVRIRASS AQPMQQASSV AVAEPIRPIA VRQSRKASLA RFLEKRKDRV SSVMPYQLSK SQQGESSGSL
301: GSASTPSRLS SADDATLSNN CQESMSMDTY NGTSLAMSRR VVIELE
101: SAAYRSAVGI YAPRRIWNPK STLMTMFYNG AVNVFDVPMD KVYIHTVLAS RASVSNLPRP TQIQKSDSQV PTNTTRFAMP DPRNTFANHV SVISNPTASA
201: SQTPTLSRTT PGYQTYTPAP TTHSGVPPSV VPPVRIRASS AQPMQQASSV AVAEPIRPIA VRQSRKASLA RFLEKRKDRV SSVMPYQLSK SQQGESSGSL
301: GSASTPSRLS SADDATLSNN CQESMSMDTY NGTSLAMSRR VVIELE
001: MERDFLGLSD KQYLSNNVKH EVNDDAVEER GLSTKAAREW GKSKVFATSS FMPSSDFQEA KAFPGAYQWG SVSAANVFRR CQFGGAFQNA TPLLLGGSVP
101: LPTHPSLVPR VASSGSSPQL TIFYGGTISV FNDISPDKAQ AIMLCAGNGL KGETGDSKPV REAERMCRDT PVAATNAMSM IESFNAAPRN MIPSVPQARK
201: ASLARFLEKR KERLMSAMPY KKMLLDLSTG ESSGMNYSST SPT
101: LPTHPSLVPR VASSGSSPQL TIFYGGTISV FNDISPDKAQ AIMLCAGNGL KGETGDSKPV REAERMCRDT PVAATNAMSM IESFNAAPRN MIPSVPQARK
201: ASLARFLEKR KERLMSAMPY KKMLLDLSTG ESSGMNYSST SPT
Arabidopsis Description
JAZ9TIFY domain/Divergent CCT motif family protein [Source:UniProtKB/TrEMBL;Acc:A0A1P8API7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.