Factsheet for HORVU6Hr1G034720.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	extracellular, mitochondrion, nucleus
MultiLoc:	extracellular
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU2Hr1G109740.2
HORVU2Hr1G109820.1
HORVU3Hr1G075060.1
HORVU4Hr1G026030.9
HORVU5Hr1G043650.2
HORVU6Hr1G057630.1
HORVU6Hr1G089280.5
HORVU7Hr1G034850.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G67170.1	HORVU7Hr1G034850.1	AT3G13990.1	21798944
AT1G67170.1	HORVU2Hr1G109740.2	AT3G51180.1	21798944
AT1G67170.1	HORVU2Hr1G109820.1	AT3G51180.1	21798944
AT1G67170.1	HORVU4Hr1G026030.9	AT5G04170.1	21798944
AT1G67170.1	HORVU5Hr1G043650.2	AT5G04170.1	21798944
AT1G67170.1	HORVU6Hr1G057630.1	AT5G61380.1	21798944
AT1G67170.1	HORVU3Hr1G075060.1	AT5G64430.1	21798944
AT1G67170.1	HORVU6Hr1G089280.5	AT5G64430.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G198100.1	Wheat	extracellular, mitochondrion, nucleus, plastid	93.19	89.45
TraesCS6A01G169900.1	Wheat	nucleus	90.55	88.22
TraesCS6D01G159700.1	Wheat	nucleus	90.33	88.01
Os02t0192100-01	Rice	mitochondrion	40.88	74.4
EES06432	Sorghum	mitochondrion	67.91	61.92
GSMUA_Achr1P19060_001	Banana	cytosol, mitochondrion, nucleus, plastid	43.96	46.19
VIT_14s0083g00450.t01	Wine grape	mitochondrion	43.08	45.27
GSMUA_Achr1P15680_001	Banana	endoplasmic reticulum, plasma membrane	23.3	44.54
CDY12623	Canola	nucleus	28.57	41.01
Bra004207.1-P	Field mustard	nucleus	30.77	40.7
CDX96108	Canola	cytosol, mitochondrion, nucleus, plastid	30.77	40.7
Bra034018.1-P	Field mustard	nucleus	27.25	40.52
CDY01786	Canola	cytosol	30.99	40.52
AT1G67170.1	Thale cress	nucleus	31.43	39.83
KRH01477	Soybean	nucleus	35.16	39.6
Solyc02g065630.2.1	Tomato	nucleus	37.58	38.69
PGSC0003DMT400068308	Potato	plastid	38.24	38.5
CDY54119	Canola	mitochondrion	24.4	30.41
HORVU3Hr1G114170.1	Barley	cytosol	16.92	28.84
HORVU1Hr1G058340.3	Barley	nucleus	14.07	24.06
HORVU2Hr1G047850.4	Barley	mitochondrion	19.12	23.39
HORVU5Hr1G112380.1	Barley	cytosol	15.38	19.55

Protein Annotations

EnsemblPlants:HORVU6Hr1G034720.1	EnsemblPlantsGene:HORVU6Hr1G034720	ncoils:Coil	PANTHER:PTHR33405	PANTHER:PTHR33405:SF5	SEG:seg
UniParc:UPI0001CADDFE	UniProt:A0A287TWK6	MapMan:35.1	:	:	:

Description

No Description!

Coordinates

chrchr6H:+:164364821..164370195

Molecular Weight (calculated)

48281.0 Da

IEP (calculated)

7.941

GRAVY (calculated)

-0.780

Length

455 amino acids

Sequence
(BLAST)

001: MGSKGRMPPS YHHRPLPGSG SGPPHGMMHR DPYGPGMHPP PGPGPYPYDM LPPPEILEQK LAVQCGEIQK LAVENERLAT SHVSLRKELA AAQQELQRLQ
101: AQGEAAKAAE EQEMRGLLDK AAKMEADLKS YESVKADLQQ AHTEAQNLAA ARQHLSAEVQ KLNKDLQRNF GEAQQLPALM ADLDAARQEY QHLRAAYEYE
201: RKLKMDHSES LQVTKTNYDS MVTELEKLRA ELTNSTNIDR SGTLYNPNLA QKDGGTSGRH SAYDGGYGGA QARTPPGMPD PLSGSPAGTA PLSGYDPSRG
301: NAYETSRLAR VHDASRGATG YDSLKVAGYD TSRMPALGAQ TAAPTAHGSS AGYYGSAQVP PSYASGPVSS SSYGATTARP HGSAQGLSSY GQTQAPSSYA
401: HTQIPPSYGL AQASSHFGPT QGGSPYGLSA RPQAYGSAQA APNTGGAYQT PHGRR

Best Arabidopsis Sequence Match ( AT1G67170.1 )
(BLAST)

001: MESKGRIHPS HHHMRRPLPG PGGCIAHPET FGNHGAIPPS AAQGVYPSFN MLPPPEVMEQ KFVAQHGELQ RLAIENQRLG GTHGSLRQEL AAAQHEIQML
101: HAQIGSMKSE REQRMMGLAE KVAKMETELQ KSEAVKLEMQ QARAEARSLV VAREELMSKV HQLTQELQKS RSDVQQIPAL MSELENLRQE YQQCRATYDY
201: EKKFYNDHLE SLQAMEKNYM TMAREVEKLQ AQLMNNANSD RRAGGPYGNN INAEIDASGH QSGNGYYEDA FGPQGYIPQP VAGNATGPNS VVGAAQYPYQ
301: GVTQPGYFPQ RPGYNFPRGP PGSYDPTTRL PTGPYGAPFP PGPSNNTPYA GTHGNPSRR

Arabidopsis Description

FLXL2Protein FLX-like 2 [Source:UniProtKB/Swiss-Prot;Acc:Q84TD8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.