Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU2Hr1G109740.2 | |
| HORVU2Hr1G109820.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G64430.1 | HORVU2Hr1G109740.2 | AT3G51180.1 | 21798944 |
| AT5G64430.1 | HORVU2Hr1G109820.1 | AT3G51180.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH57272 | Soybean | cytosol | 14.81 | 47.83 |
| VIT_14s0068g01740.t01 | Wine grape | cytosol | 9.09 | 36.99 |
| TraesCS6D01G365200.1 | Wheat | cytosol | 57.91 | 35.17 |
| HORVU6Hr1G089280.5 | Barley | cytosol, mitochondrion, nucleus | 64.65 | 34.85 |
| TraesCS6B01G419500.1 | Wheat | cytosol | 57.24 | 34.48 |
| TraesCS6A01G380500.1 | Wheat | cytosol | 61.28 | 34.21 |
| HORVU3Hr1G008310.1 | Barley | cytosol | 14.14 | 29.37 |
| VIT_17s0000g07170.t01 | Wine grape | cytosol | 16.84 | 28.57 |
| VIT_02s0033g00640.t01 | Wine grape | cytosol | 16.5 | 28.0 |
| CDY31319 | Canola | nucleus | 23.91 | 25.45 |
| Zm00001d051939_P001 | Maize | cytosol | 45.45 | 25.09 |
| EES07730 | Sorghum | cytosol | 46.8 | 24.56 |
| Zm00001d018447_P001 | Maize | extracellular | 43.43 | 23.54 |
| Solyc02g091670.1.1 | Tomato | cytosol | 19.53 | 21.48 |
| PGSC0003DMT400078796 | Potato | cytosol | 19.53 | 21.48 |
| KRH16903 | Soybean | nucleus | 24.92 | 20.9 |
| KRH72507 | Soybean | cytosol, nucleus, peroxisome | 24.24 | 20.06 |
| GSMUA_Achr1P20460_001 | Banana | cytosol, plastid | 27.27 | 19.57 |
| HORVU6Hr1G055230.3 | Barley | cytosol | 14.14 | 18.03 |
| PGSC0003DMT400016330 | Potato | nucleus | 26.94 | 17.43 |
| Solyc04g076820.1.1 | Tomato | plastid | 27.27 | 17.09 |
| HORVU2Hr1G041600.1 | Barley | mitochondrion | 17.17 | 16.89 |
| KRH49860 | Soybean | nucleus | 26.26 | 16.49 |
| KRH42038 | Soybean | cytosol | 25.59 | 15.97 |
| CDX69896 | Canola | nucleus | 25.25 | 15.96 |
| Bra024295.1-P | Field mustard | nucleus | 23.23 | 15.9 |
| Bra009393.1-P | Field mustard | nucleus | 25.25 | 15.82 |
| CDY21590 | Canola | nucleus | 25.25 | 15.79 |
| KRH21700 | Soybean | nucleus | 23.23 | 15.68 |
| VIT_03s0097g00600.t01 | Wine grape | nucleus | 24.58 | 15.63 |
| Bra031918.1-P | Field mustard | nucleus | 24.92 | 15.61 |
| CDY46804 | Canola | nucleus | 24.92 | 15.55 |
| VIT_18s0001g08010.t01 | Wine grape | nucleus | 25.59 | 15.48 |
| KRH10652 | Soybean | cytosol | 23.23 | 15.47 |
| CDY58263 | Canola | nucleus | 24.58 | 15.24 |
| CDX84525 | Canola | nucleus | 24.58 | 15.05 |
| GSMUA_Achr1P05710_001 | Banana | cytosol | 24.24 | 14.78 |
| PGSC0003DMT400008036 | Potato | nucleus | 23.91 | 14.46 |
| AT5G64430.1 | Thale cress | nucleus | 24.58 | 14.23 |
| Solyc01g106320.2.1 | Tomato | extracellular | 23.57 | 14.2 |
| AT5G09620.1 | Thale cress | nucleus | 24.24 | 13.56 |
| HORVU1Hr1G065470.6 | Barley | mitochondrion | 17.85 | 12.21 |
| HORVU4Hr1G026270.1 | Barley | cytosol | 12.12 | 10.91 |
| HORVU3Hr1G008420.4 | Barley | cytosol, nucleus | 19.53 | 6.86 |
| HORVU3Hr1G064760.1 | Barley | cytosol | 3.03 | 4.64 |
Protein Annotations
| EnsemblPlants:HORVU3Hr1G075060.1 | EnsemblPlantsGene:HORVU3Hr1G075060 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | InterPro:IPR000270 |
| InterPro:PB1_dom | PANTHER:PTHR31066 | PANTHER:PTHR31066:SF5 | PFAM:PF00564 | SEG:seg | SMART:SM00666 |
| SUPFAM:SSF54277 | UniParc:UPI000B4627FA | UniProt:A0A287LPP3 | MapMan:35.2 | : | : |
Description
No Description!
Coordinates
chrchr3H:+:561500252..561501311
Molecular Weight (calculated)
31113.8 Da
IEP (calculated)
4.918
GRAVY (calculated)
-0.275
Length
297 amino acids
Sequence
(BLAST)
(BLAST)
001: VSVSPYQCFV AGDHPQHLPR PPAAAAAAAA AGLLVGEEGV VGAAGGGVAG QGEAGGLLVV LVAVGAGVVA AERGGVGGLG DNQLSYVNGD TKILSIERPL
101: RFPDFAARLA GLAAARGDLC VKYQLPGEDL DALVSVTNDE DLEHLVIEYD RFHLFRAAPG SGGSSRGGST PRLRVFLFPV QPPSRPPSPP KQLEQREWYL
201: DLKSASPAPL PQALPPPQQQ NQQMKQEAAP VESPPPAAPM AVPQSVVMAS KTGPDYLFGF DYGGLEERGE DERRGLGRRV AQDAGEEEEG AHIRRRQ
101: RFPDFAARLA GLAAARGDLC VKYQLPGEDL DALVSVTNDE DLEHLVIEYD RFHLFRAAPG SGGSSRGGST PRLRVFLFPV QPPSRPPSPP KQLEQREWYL
201: DLKSASPAPL PQALPPPQQQ NQQMKQEAAP VESPPPAAPM AVPQSVVMAS KTGPDYLFGF DYGGLEERGE DERRGLGRRV AQDAGEEEEG AHIRRRQ
001: MEKFSYNSYP DSTDSSPRSR EIEFDNPPPP WDDQNQNQQQ HSYKVKFMCS YGGKIQPRPH DNQLTYVNGE TKILSVDRGI RFPVLASKLS TVCGGGDGGG
101: GEVTFKYQLP GEDLDALISV TNDDDLEHMM HEYDRLLRLS SKPARMRLFL FPASSGFGSQ SSTQSDRDRF VEALNTVPRL SESEKSVTAP PNNADFLFGS
201: EKVAAPPPPP PAEVKLPVPV ALEPPLFNDP RVIQPDHVVN PMEIQRQMQE FQRMHIRDQE QQQQQEAVYR RKSNEDGLIE TGGGYFSPPY IQNPAPPPPQ
301: QTIPQTNPQA PPMTTFWQGN HNPGVVFPTT THGLGLPEQP VYMIPSPSPS PVYHAPPPPQ PQGVIRPILT GQVNQGGYYP QVQRVASDTY REPHQSPYNV
401: AQPLQAPIGT KAAQQQQPPP PQPFTSGPPP PQYTAVPPPR QVVGLPDTSA YTQVTYTGGM GKQVYYTEAP PPQYHGVGLP VTGMSELRTG PDGKLVAMNM
501: APKVSSQSSD SAV
101: GEVTFKYQLP GEDLDALISV TNDDDLEHMM HEYDRLLRLS SKPARMRLFL FPASSGFGSQ SSTQSDRDRF VEALNTVPRL SESEKSVTAP PNNADFLFGS
201: EKVAAPPPPP PAEVKLPVPV ALEPPLFNDP RVIQPDHVVN PMEIQRQMQE FQRMHIRDQE QQQQQEAVYR RKSNEDGLIE TGGGYFSPPY IQNPAPPPPQ
301: QTIPQTNPQA PPMTTFWQGN HNPGVVFPTT THGLGLPEQP VYMIPSPSPS PVYHAPPPPQ PQGVIRPILT GQVNQGGYYP QVQRVASDTY REPHQSPYNV
401: AQPLQAPIGT KAAQQQQPPP PQPFTSGPPP PQYTAVPPPR QVVGLPDTSA YTQVTYTGGM GKQVYYTEAP PPQYHGVGLP VTGMSELRTG PDGKLVAMNM
501: APKVSSQSSD SAV
Arabidopsis Description
At5g64430 [Source:UniProtKB/TrEMBL;Acc:Q9FGF3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.