Factsheet for GSMUA_Achr1P05710_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 2
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr1P19920_001
GSMUA_Achr3P11230_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G64430.1	GSMUA_Achr1P19920_001	AT3G51180.1	21798944
AT5G64430.1	GSMUA_Achr3P11230_001	AT3G51180.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH57272	Soybean	cytosol	10.68	56.52
GSMUA_Achr1P20460_001	Banana	cytosol, plastid	41.68	49.03
VIT_14s0068g01740.t01	Wine grape	cytosol	6.57	43.84
Solyc02g091670.1.1	Tomato	cytosol	18.69	33.7
PGSC0003DMT400078796	Potato	cytosol	18.48	33.33
CDY31319	Canola	nucleus	18.89	32.97
VIT_17s0000g07170.t01	Wine grape	cytosol	11.5	32.0
VIT_03s0097g00600.t01	Wine grape	nucleus	29.77	31.05
VIT_02s0033g00640.t01	Wine grape	cytosol	10.88	30.29
VIT_18s0001g08010.t01	Wine grape	nucleus	30.39	30.14
GSMUA_Achr3P19440_001	Banana	plastid	9.86	29.81
KRH16903	Soybean	nucleus	21.56	29.66
KRH49860	Soybean	nucleus	28.34	29.18
Solyc04g076820.1.1	Tomato	plastid	27.93	28.69
CDY46804	Canola	nucleus	27.52	28.15
KRH42038	Soybean	cytosol	27.52	28.15
PGSC0003DMT400016330	Potato	nucleus	26.49	28.1
Zm00001d051939_P001	Maize	cytosol	30.6	27.7
KRH72507	Soybean	cytosol, nucleus, peroxisome	20.12	27.3
Bra031918.1-P	Field mustard	nucleus	26.28	27.0
KRH21700	Soybean	nucleus	24.23	26.82
Zm00001d018447_P001	Maize	extracellular	29.98	26.64
EES07730	Sorghum	cytosol	30.8	26.5
KRH10652	Soybean	cytosol	24.02	26.23
PGSC0003DMT400008036	Potato	nucleus	26.08	25.87
TraesCS6B01G419500.1	Wheat	cytosol	26.08	25.76
Solyc01g106320.2.1	Tomato	extracellular	26.08	25.76
TraesCS6D01G365200.1	Wheat	cytosol	25.67	25.56
CDY58263	Canola	nucleus	25.05	25.47
TraesCS6A01G380500.1	Wheat	cytosol	27.72	25.38
Bra024295.1-P	Field mustard	nucleus	22.59	25.35
AT5G64430.1	Thale cress	nucleus	26.69	25.34
CDY21590	Canola	nucleus	24.44	25.05
CDX84525	Canola	nucleus	24.85	24.95
CDX69896	Canola	nucleus	24.02	24.89
GSMUA_Achr10P...	Banana	cytosol	10.47	24.76
Bra009393.1-P	Field mustard	nucleus	24.02	24.68
HORVU6Hr1G089280.5	Barley	cytosol, mitochondrion, nucleus	27.52	24.32
HORVU3Hr1G075060.1	Barley	cytosol, peroxisome	14.78	24.24
GSMUA_Achr8P16400_001	Banana	plastid	9.65	23.27
GSMUA_Achr11P...	Banana	cytosol, nucleus, plastid	10.06	22.48
GSMUA_Achr4P33650_001	Banana	mitochondrion	14.17	22.26
AT5G09620.1	Thale cress	nucleus	23.2	21.28
GSMUA_AchrUn_...	Banana	nucleus	15.4	19.43
GSMUA_Achr6P06660_001	Banana	plastid	9.24	18.59
GSMUA_Achr10P...	Banana	nucleus	12.53	18.05
GSMUA_Achr11P...	Banana	plastid	11.09	17.59
GSMUA_Achr3P21900_001	Banana	nucleus	12.12	16.03
GSMUA_Achr8P18320_001	Banana	nucleus	14.99	14.09
GSMUA_Achr1P21240_001	Banana	nucleus	17.04	13.83
GSMUA_Achr2P07240_001	Banana	nucleus	15.61	13.82
GSMUA_Achr11P...	Banana	plasma membrane, vacuole	18.28	12.71
GSMUA_Achr6P09850_001	Banana	endoplasmic reticulum, extracellular	16.22	11.24

Protein Annotations

EnsemblPlants:GSMUA_Achr1P05710_001	EnsemblPlants:GSMUA_Achr1T05710_001	EnsemblPlantsGene:GSMUA_Achr1G05710_001	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR000270	InterPro:PB1_dom	PANTHER:PTHR31066	PFAM:PF00564	SEG:seg	SMART:SM00666
SUPFAM:SSF54277	UniParc:UPI000294FCDA	UniProt:M0RXC9	MapMan:35.2	:	:

Description

Putative uncharacterized protein [Source:GMGC_GENE;Acc:GSMUA_Achr1G05710_001]

Coordinates

chr1:+:4676396..4678048

Molecular Weight (calculated)

51671.2 Da

IEP (calculated)

6.439

GRAVY (calculated)

-0.177

Length

487 amino acids

Sequence
(BLAST)

001: MDNIHGLACA PHLQSPLAAV DQSSEARMGC PIPLTWSCAT PPPPAENPIL RRKAVLVKSP NRADPHSATV VFVSRDTRLL YAVDAGYILR RFASPIESFT
101: LISPPLAVGS SRMDSSVVDT SSLSLPVDRE NGVAPASDDN PSPQAATSPG AGGRVKLMVS YGGRIQPRPH DSARLSYVGG ETKILSLDRS ARLPTLLAKL
201: ATLVPCAPFC LKYQLPGEDL DALVSVTDED DLEHMMVEYD RLHGSSSSPK PTHRLRLFLF TVRPPPPPPS AALLDAARPD RQWFFDALNA VEPHQQIPEP
301: ADSTVTAPVV VSVAEVQGPI QELHSLQVAE NPPPLIPQNS SEEAVRRDHA TEYQVPRDAE KVAPAAAQAP EQRSGLPVAR YASLAPGHDQ AVYLLPTSQG
401: VYPGFYAAAP WMATAEAYRS AAVSAKAMGR GGGAEAYAAG GGQLAYDSTG RVVYYASMVP TYQTVSSVAA YNPVGAAVKA AKPSQIS

Best Arabidopsis Sequence Match ( AT5G64430.1 )
(BLAST)

001: MEKFSYNSYP DSTDSSPRSR EIEFDNPPPP WDDQNQNQQQ HSYKVKFMCS YGGKIQPRPH DNQLTYVNGE TKILSVDRGI RFPVLASKLS TVCGGGDGGG
101: GEVTFKYQLP GEDLDALISV TNDDDLEHMM HEYDRLLRLS SKPARMRLFL FPASSGFGSQ SSTQSDRDRF VEALNTVPRL SESEKSVTAP PNNADFLFGS
201: EKVAAPPPPP PAEVKLPVPV ALEPPLFNDP RVIQPDHVVN PMEIQRQMQE FQRMHIRDQE QQQQQEAVYR RKSNEDGLIE TGGGYFSPPY IQNPAPPPPQ
301: QTIPQTNPQA PPMTTFWQGN HNPGVVFPTT THGLGLPEQP VYMIPSPSPS PVYHAPPPPQ PQGVIRPILT GQVNQGGYYP QVQRVASDTY REPHQSPYNV
401: AQPLQAPIGT KAAQQQQPPP PQPFTSGPPP PQYTAVPPPR QVVGLPDTSA YTQVTYTGGM GKQVYYTEAP PPQYHGVGLP VTGMSELRTG PDGKLVAMNM
501: APKVSSQSSD SAV

Arabidopsis Description

At5g64430 [Source:UniProtKB/TrEMBL;Acc:Q9FGF3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.