CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH28782
KRH28783
KRH69800
KRH69802
KRH76672

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G64430.1	KRH28782	AT3G51180.1	21798944
AT5G64430.1	KRH28783	AT3G51180.1	21798944
AT5G64430.1	KRH69800	AT3G51180.1	21798944
AT5G64430.1	KRH69802	AT3G51180.1	21798944
AT5G64430.1	KRH76672	AT3G51180.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH21700	Soybean	nucleus	85.87	87.05
KRH57272	Soybean	cytosol	14.13	68.48
KRH42038	Soybean	cytosol	64.57	60.5
KRH49860	Soybean	nucleus	63.9	60.25
VIT_03s0097g00600.t01	Wine grape	nucleus	52.47	50.11
CDY31319	Canola	nucleus	28.92	46.24
Solyc01g106320.2.1	Tomato	extracellular	50.0	45.23
PGSC0003DMT400008036	Potato	nucleus	49.33	44.81
CDX69896	Canola	nucleus	44.17	41.91
CDY21590	Canola	nucleus	44.17	41.47
Bra009393.1-P	Field mustard	nucleus	43.95	41.35
CDY58263	Canola	nucleus	43.95	40.92
Bra031918.1-P	Field mustard	nucleus	43.27	40.72
CDY46804	Canola	nucleus	43.27	40.55
CDX84525	Canola	nucleus	43.5	40.0
AT5G64430.1	Thale cress	nucleus	45.74	39.77
KRH29762	Soybean	plastid	10.31	38.66
Bra024295.1-P	Field mustard	nucleus	37.0	38.02
KRH16903	Soybean	nucleus	28.92	36.44
AT5G09620.1	Thale cress	nucleus	43.27	36.35
KRH72507	Soybean	cytosol, nucleus, peroxisome	28.25	35.1
KRH63619	Soybean	plastid	14.13	32.47
KRH69636	Soybean	plastid	15.02	31.6
KRH54323	Soybean	cytosol, nucleus, plastid	13.0	31.18
KRH03222	Soybean	cytosol	13.68	30.81
KRH45586	Soybean	plastid	11.88	29.12
GSMUA_Achr1P20460_001	Banana	cytosol, plastid	26.91	28.99
KRH74522	Soybean	nucleus	14.8	28.57
TraesCS6B01G419500.1	Wheat	cytosol	30.49	27.59
TraesCS6D01G365200.1	Wheat	cytosol	30.04	27.4
TraesCS6A01G380500.1	Wheat	cytosol	32.51	27.26
Zm00001d051939_P001	Maize	cytosol	32.29	26.77
Zm00001d018447_P001	Maize	extracellular	32.06	26.09
HORVU6Hr1G089280.5	Barley	cytosol, mitochondrion, nucleus	32.06	25.95
KRH06059	Soybean	nucleus	15.25	25.37
EES07730	Sorghum	cytosol	31.61	24.91
KRH26304	Soybean	nucleus	14.57	24.9
GSMUA_Achr1P05710_001	Banana	cytosol	26.23	24.02
KRH41951	Soybean	nucleus	21.97	23.28
HORVU3Hr1G075060.1	Barley	cytosol, peroxisome	15.47	23.23
KRH49930	Soybean	nucleus	20.63	21.7
KRH35888	Soybean	nucleus	28.48	17.96
KRG90906	Soybean	nucleus, plastid	28.48	17.61
KRH48572	Soybean	cytosol	25.11	17.47
KRH39133	Soybean	cytosol	26.01	17.34
KRH38173	Soybean	nucleus	24.66	16.87

Protein Annotations

EntrezGene:100780332	Gene3D:3.10.20.90	MapMan:35.2	EMBL:ACUP02009151	ncoils:Coil	EnsemblPlantsGene:GLYMA_15G060600
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR000270	UniProt:K7M9W4	ProteinID:KRH10651.1
EnsemblPlants:KRH10652	ProteinID:KRH10652	ProteinID:KRH10652.1	InterPro:PB1_dom	PFAM:PF00564	PANTHER:PTHR31066
PANTHER:PTHR31066:SF2	SMART:SM00666	SUPFAM:SSF54277	UniParc:UPI000233B71F	SEG:seg	:

Description

hypothetical protein

Coordinates

chr15:-:4681846..4685351

Molecular Weight (calculated)

48766.3 Da

IEP (calculated)

6.248

GRAVY (calculated)

-0.572

Length

446 amino acids

Sequence
(BLAST)

001: MKENYSYQSY PDSGESSPRS REIDFENPPP WDHQNYKAKF ICSYGGKIHP RSHDNQLSYV GGDTKILAVD RSIKFPAMLA KLSALCDAQD NNITFKYQLP
101: GEDLDALISV TNDDDLDHMM HEYDRLYRAS ARPSRMRLFL FPSDTPPSPP PASAPPDTVI KPNNVDFLFA LEKNVAVPAP PPPQPPPVSV KFNDPLPEPV
201: APQPEYRSRL NFNPAVSDPS AIQRQLHQLQ IAENEKASYR RKNEDNYPAG DYYVQKMPEK FPPANFPASA PGYWPEKHVS GEAYPPAVTA TSGGGEPSVY
301: MIPAPGTFYH APVMRPPATQ GYYAVQQMGS DNYREAPVYG GVPPPKAAIP ASLAPAQQPV KAPAYTEGFG MVRPGGMLDN TVGPYSQVAY DSASGRQVYY
401: TVPGGGVVHA PPYQGVFPPV TADMRPGVVS LGQDVKVINK VTQGSV

Best Arabidopsis Sequence Match ( AT5G64430.1 )
(BLAST)

001: MEKFSYNSYP DSTDSSPRSR EIEFDNPPPP WDDQNQNQQQ HSYKVKFMCS YGGKIQPRPH DNQLTYVNGE TKILSVDRGI RFPVLASKLS TVCGGGDGGG
101: GEVTFKYQLP GEDLDALISV TNDDDLEHMM HEYDRLLRLS SKPARMRLFL FPASSGFGSQ SSTQSDRDRF VEALNTVPRL SESEKSVTAP PNNADFLFGS
201: EKVAAPPPPP PAEVKLPVPV ALEPPLFNDP RVIQPDHVVN PMEIQRQMQE FQRMHIRDQE QQQQQEAVYR RKSNEDGLIE TGGGYFSPPY IQNPAPPPPQ
301: QTIPQTNPQA PPMTTFWQGN HNPGVVFPTT THGLGLPEQP VYMIPSPSPS PVYHAPPPPQ PQGVIRPILT GQVNQGGYYP QVQRVASDTY REPHQSPYNV
401: AQPLQAPIGT KAAQQQQPPP PQPFTSGPPP PQYTAVPPPR QVVGLPDTSA YTQVTYTGGM GKQVYYTEAP PPQYHGVGLP VTGMSELRTG PDGKLVAMNM
501: APKVSSQSSD SAV

Arabidopsis Description

At5g64430 [Source:UniProtKB/TrEMBL;Acc:Q9FGF3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.