Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY21590 | Canola | nucleus | 69.3 | 77.47 |
| CDX69896 | Canola | nucleus | 68.36 | 77.23 |
| Bra009393.1-P | Field mustard | nucleus | 68.93 | 77.22 |
| KRH57272 | Soybean | cytosol | 11.68 | 67.39 |
| AT5G64430.1 | Thale cress | nucleus | 57.25 | 59.26 |
| VIT_03s0097g00600.t01 | Wine grape | nucleus | 38.98 | 44.33 |
| KRH10652 | Soybean | cytosol | 36.35 | 43.27 |
| KRH21700 | Soybean | nucleus | 35.03 | 42.27 |
| KRH42038 | Soybean | cytosol | 37.85 | 42.23 |
| KRH49860 | Soybean | nucleus | 37.48 | 42.07 |
| PGSC0003DMT400008036 | Potato | nucleus | 38.79 | 41.96 |
| Solyc01g106320.2.1 | Tomato | extracellular | 38.23 | 41.18 |
| AT1G70640.1 | Thale cress | cytosol | 10.36 | 31.61 |
| AT3G48240.1 | Thale cress | cytosol, nucleus, plastid | 9.98 | 29.44 |
| AT5G63130.2 | Thale cress | nucleus | 10.55 | 29.17 |
| GSMUA_Achr1P20460_001 | Banana | cytosol, plastid | 22.41 | 28.74 |
| Zm00001d018447_P001 | Maize | extracellular | 27.31 | 26.46 |
| Zm00001d051939_P001 | Maize | cytosol | 26.18 | 25.84 |
| TraesCS6B01G419500.1 | Wheat | cytosol | 23.92 | 25.76 |
| TraesCS6A01G380500.1 | Wheat | cytosol | 25.8 | 25.75 |
| EES07730 | Sorghum | cytosol | 27.31 | 25.62 |
| AT1G25300.1 | Thale cress | cytosol, nucleus, plasma membrane | 12.99 | 25.37 |
| TraesCS6D01G365200.1 | Wheat | cytosol | 23.35 | 25.36 |
| AT5G49920.1 | Thale cress | nucleus | 13.75 | 25.35 |
| HORVU6Hr1G089280.5 | Barley | cytosol, mitochondrion, nucleus | 25.42 | 24.5 |
| HORVU3Hr1G075060.1 | Barley | cytosol, peroxisome | 13.56 | 24.24 |
| GSMUA_Achr1P05710_001 | Banana | cytosol | 21.28 | 23.2 |
| AT4G05150.1 | Thale cress | nucleus | 17.89 | 19.92 |
| AT5G16220.1 | Thale cress | plastid | 15.25 | 17.02 |
| AT2G01190.1 | Thale cress | nucleus, plastid | 22.6 | 16.67 |
| AT3G18230.1 | Thale cress | nucleus, plastid | 18.08 | 14.41 |
Protein Annotations
| Gene3D:3.10.20.90 | MapMan:35.2 | EntrezGene:830821 | ProteinID:AED91418.1 | ArrayExpress:AT5G09620 | EnsemblPlantsGene:AT5G09620 |
| RefSeq:AT5G09620 | TAIR:AT5G09620 | RefSeq:AT5G09620-TAIR-G | EnsemblPlants:AT5G09620.1 | TAIR:AT5G09620.1 | ProteinID:BAB09517.1 |
| ProteinID:CAB89368.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | InterPro:IPR000270 |
| RefSeq:NP_196524.1 | InterPro:PB1_dom | PFAM:PF00564 | PO:PO:0000005 | PO:PO:0000013 | PO:PO:0000037 |
| PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 |
| PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 |
| PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 |
| PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 |
| PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 |
| PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PANTHER:PTHR31066 | PANTHER:PTHR31066:SF2 |
| UniProt:Q9LXC6 | SMART:SM00666 | SUPFAM:SSF54277 | UniParc:UPI00000A78D2 | SEG:seg | : |
Description
Gb [Source:UniProtKB/TrEMBL;Acc:Q9LXC6]
Coordinates
chr5:-:2983448..2985760
Molecular Weight (calculated)
59664.0 Da
IEP (calculated)
5.053
GRAVY (calculated)
-0.873
Length
531 amino acids
Sequence
(BLAST)
(BLAST)
001: MDKFSYNSYP DSAESSPRSR DVEFENPSPW EDQQQQNYKV KLMCSYGGKI QPRPHDNQLT YVNGDTKIMS VDRGIRFPAL VSKLSAVCSG GGDGGEISFK
101: YQLPGEDLDA LISVTNDEDL EHMMHEYDRL LRLSTKPARM RLFLFPSSPI SGGFGSEGST KSDRDTLNPI PSRPESEKSV TAPPNNADFL FGSEKVAPIP
201: PSPVKVPQPV PEPVVLEPPQ MFVDQRMLQP EHGVNPAEIQ RQIQEFQMIQ IRDQEQQMLH QNQLHQQQQQ QEAIHQNQLH HQQEVIHQNQ LLQQEAIHQN
301: QMLQQQQQQE AMYRRKTEDE AGRYFPPTYT QNPAPVTNQQ PPVGYWQGNT NNSNIQGNIY TTTSQNLPEQ QQQQQQVYMI PAQSQAPGTL YQSVMRPTVQ
401: GNQGYYPSPV QRLHHPDAYM EQQNQPGYNV VQPQPTFSGG PQVMTSVGPQ VMTSVGPPMG LQEPYSQMGK PVYYTVAGEG MMVQPPPAQP QQQQQQYQGM
501: GQPVSGMTDL RTGPDGKVAV NMAAPQVSDS V
101: YQLPGEDLDA LISVTNDEDL EHMMHEYDRL LRLSTKPARM RLFLFPSSPI SGGFGSEGST KSDRDTLNPI PSRPESEKSV TAPPNNADFL FGSEKVAPIP
201: PSPVKVPQPV PEPVVLEPPQ MFVDQRMLQP EHGVNPAEIQ RQIQEFQMIQ IRDQEQQMLH QNQLHQQQQQ QEAIHQNQLH HQQEVIHQNQ LLQQEAIHQN
301: QMLQQQQQQE AMYRRKTEDE AGRYFPPTYT QNPAPVTNQQ PPVGYWQGNT NNSNIQGNIY TTTSQNLPEQ QQQQQQVYMI PAQSQAPGTL YQSVMRPTVQ
401: GNQGYYPSPV QRLHHPDAYM EQQNQPGYNV VQPQPTFSGG PQVMTSVGPQ VMTSVGPPMG LQEPYSQMGK PVYYTVAGEG MMVQPPPAQP QQQQQQYQGM
501: GQPVSGMTDL RTGPDGKVAV NMAAPQVSDS V
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.