CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH28782
KRH28783
KRH69800
KRH69802
KRH76672

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G64430.1	KRH28782	AT3G51180.1	21798944
AT5G64430.1	KRH28783	AT3G51180.1	21798944
AT5G64430.1	KRH69800	AT3G51180.1	21798944
AT5G64430.1	KRH69802	AT3G51180.1	21798944
AT5G64430.1	KRH76672	AT3G51180.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH10652	Soybean	cytosol	87.05	85.87
KRH57272	Soybean	cytosol	13.86	66.3
KRH42038	Soybean	cytosol	64.09	59.24
KRH49860	Soybean	nucleus	62.73	58.35
VIT_03s0097g00600.t01	Wine grape	nucleus	53.41	50.32
CDY31319	Canola	nucleus	29.09	45.88
Solyc01g106320.2.1	Tomato	extracellular	50.91	45.44
PGSC0003DMT400008036	Potato	nucleus	50.23	45.01
Bra031918.1-P	Field mustard	nucleus	44.55	41.35
CDY58263	Canola	nucleus	45.0	41.34
CDY46804	Canola	nucleus	44.55	41.18
CDX84525	Canola	nucleus	44.77	40.62
AT5G64430.1	Thale cress	nucleus	47.05	40.35
CDX69896	Canola	nucleus	42.73	40.0
KRH29762	Soybean	plastid	10.68	39.5
Bra009393.1-P	Field mustard	nucleus	42.5	39.45
CDY21590	Canola	nucleus	42.5	39.37
Bra024295.1-P	Field mustard	nucleus	37.95	38.48
KRH16903	Soybean	nucleus	29.32	36.44
KRH72507	Soybean	cytosol, nucleus, peroxisome	28.86	35.38
AT5G09620.1	Thale cress	nucleus	42.27	35.03
KRH63619	Soybean	plastid	14.09	31.96
KRH03222	Soybean	cytosol	14.32	31.82
KRH54323	Soybean	cytosol, nucleus, plastid	13.41	31.72
KRH69636	Soybean	plastid	15.23	31.6
KRH45586	Soybean	plastid	12.5	30.22
GSMUA_Achr1P20460_001	Banana	cytosol, plastid	27.73	29.47
KRH74522	Soybean	nucleus	15.0	28.57
TraesCS6B01G419500.1	Wheat	cytosol	31.14	27.79
TraesCS6A01G380500.1	Wheat	cytosol	33.41	27.63
TraesCS6D01G365200.1	Wheat	cytosol	30.68	27.61
Zm00001d051939_P001	Maize	cytosol	33.64	27.51
Zm00001d018447_P001	Maize	extracellular	33.41	26.82
HORVU6Hr1G089280.5	Barley	cytosol, mitochondrion, nucleus	32.95	26.32
EES07730	Sorghum	cytosol	32.73	25.44
KRH06059	Soybean	nucleus	15.45	25.37
KRH26304	Soybean	nucleus	14.77	24.9
GSMUA_Achr1P05710_001	Banana	cytosol	26.82	24.23
KRH41951	Soybean	nucleus	22.5	23.52
HORVU3Hr1G075060.1	Barley	cytosol, peroxisome	15.68	23.23
KRH49930	Soybean	nucleus	21.14	21.93
KRH35888	Soybean	nucleus	28.86	17.96
KRG90906	Soybean	nucleus, plastid	28.41	17.34
KRH39133	Soybean	cytosol	25.91	17.04
KRH48572	Soybean	cytosol	24.77	17.0
KRH38173	Soybean	nucleus	24.55	16.56

Protein Annotations

EMBL:ACUP02008362	EnsemblPlants:KRH21700	EnsemblPlantsGene:GLYMA_13G254300	EntrezGene:100801566	Gene3D:3.10.20.90	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR000270	InterPro:PB1_dom	ncoils:Coil	PANTHER:PTHR31066
PANTHER:PTHR31066:SF2	PFAM:PF00564	ProteinID:KRH21700	ProteinID:KRH21700.1	SEG:seg	SMART:SM00666
SUPFAM:SSF54277	UniParc:UPI0001CABE98	UniProt:I1M2J9	MapMan:35.2	:	:

Description

hypothetical protein

Coordinates

chr13:+:36014647..36016402

Molecular Weight (calculated)

48042.3 Da

IEP (calculated)

5.593

GRAVY (calculated)

-0.552

Length

440 amino acids

Sequence
(BLAST)

001: MQENYSYQSY PDSGESSPRS REIDFDNPPP WDDQNYKAKF MCSYGGKILP RSHDNQLSYV AGETKILAVD RSIKFSAMLA KLSALCDAPD NNNLTFKYQL
101: PGEDLDALIS VTNDDDLDHM MHEYDRLYRA SARPSRMRLF LFPSDTLPSP PPAASAPHDS VIKPNNVDFL FGLQPQPPPI DVKFNDPLPE PVAPPPEHPL
201: RFNFNPAVSD PSAIQRQLQQ LQIAENEQAA HRRKGEDNYP AGDYYVQKVP EKFPPPNFLA SSPGYWPEKH VSGDVYPPAV TATSGGGEPS VYMVPAPGTF
301: YHAPVMRPPP PATQGYYTVQ RMGSDNYREA PVYGGVPPPK AAVPASMAPA QQPIKAPAYT EGFGMVRPGG IVDNTGVPYA QVAYDSGSGR QVYYTAPGGG
401: VTHAPPYHGV FPPVTADMRL GGVSFGQDVK VISKLTQGSV

Best Arabidopsis Sequence Match ( AT5G64430.1 )
(BLAST)

001: MEKFSYNSYP DSTDSSPRSR EIEFDNPPPP WDDQNQNQQQ HSYKVKFMCS YGGKIQPRPH DNQLTYVNGE TKILSVDRGI RFPVLASKLS TVCGGGDGGG
101: GEVTFKYQLP GEDLDALISV TNDDDLEHMM HEYDRLLRLS SKPARMRLFL FPASSGFGSQ SSTQSDRDRF VEALNTVPRL SESEKSVTAP PNNADFLFGS
201: EKVAAPPPPP PAEVKLPVPV ALEPPLFNDP RVIQPDHVVN PMEIQRQMQE FQRMHIRDQE QQQQQEAVYR RKSNEDGLIE TGGGYFSPPY IQNPAPPPPQ
301: QTIPQTNPQA PPMTTFWQGN HNPGVVFPTT THGLGLPEQP VYMIPSPSPS PVYHAPPPPQ PQGVIRPILT GQVNQGGYYP QVQRVASDTY REPHQSPYNV
401: AQPLQAPIGT KAAQQQQPPP PQPFTSGPPP PQYTAVPPPR QVVGLPDTSA YTQVTYTGGM GKQVYYTEAP PPQYHGVGLP VTGMSELRTG PDGKLVAMNM
501: APKVSSQSSD SAV

Arabidopsis Description

At5g64430 [Source:UniProtKB/TrEMBL;Acc:Q9FGF3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.