CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX73744
CDX77980

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G64430.1	CDX73744	AT3G51180.1	21798944
AT5G64430.1	CDX77980	AT3G51180.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY58263	Canola	nucleus	94.85	96.03
AT5G64430.1	Thale cress	nucleus	81.03	76.61
CDY46804	Canola	nucleus	74.85	76.26
CDY31319	Canola	nucleus	41.65	72.4
KRH57272	Soybean	cytosol	12.37	65.22
CDX69896	Canola	nucleus	59.79	61.7
CDY21590	Canola	nucleus	60.41	61.68
VIT_03s0097g00600.t01	Wine grape	nucleus	45.77	47.54
KRH21700	Soybean	nucleus	40.62	44.77
KRH10652	Soybean	cytosol	40.0	43.5
Solyc01g106320.2.1	Tomato	extracellular	44.12	43.41
PGSC0003DMT400008036	Potato	nucleus	43.92	43.38
KRH49860	Soybean	nucleus	42.27	43.34
KRH42038	Soybean	cytosol	42.27	43.07
CDY28543	Canola	plastid	12.37	34.09
CDY48987	Canola	plastid	12.58	34.08
CDX83621	Canola	mitochondrion	12.58	33.7
CDY13638	Canola	mitochondrion	11.96	32.04
CDY66304	Canola	cytosol	10.72	31.33
CDY61217	Canola	cytosol, mitochondrion	10.52	30.72
CDY41501	Canola	cytosol	11.55	29.63
CDY72321	Canola	plastid	10.93	29.61
CDY48129	Canola	cytosol, nucleus, plastid	11.55	29.32
CDY48161	Canola	plastid	10.93	28.96
CDX84387	Canola	nucleus	11.55	28.57
CDY39571	Canola	plastid	10.72	28.42
CDX83177	Canola	mitochondrion	15.46	28.2
CDY21444	Canola	mitochondrion	15.26	28.03
CDY16375	Canola	nucleus	16.08	27.66
GSMUA_Achr1P20460_001	Banana	cytosol, plastid	23.51	27.54
CDX91540	Canola	nucleus	15.88	27.3
Zm00001d051939_P001	Maize	cytosol	30.1	27.14
TraesCS6A01G380500.1	Wheat	cytosol	29.48	26.88
TraesCS6B01G419500.1	Wheat	cytosol	26.8	26.37
CDY20093	Canola	extracellular, plasma membrane	10.52	26.29
CDY36115	Canola	cytosol, nucleus, vacuole	14.02	26.25
Zm00001d018447_P001	Maize	extracellular	29.48	26.09
EES07730	Sorghum	cytosol	30.31	25.97
TraesCS6D01G365200.1	Wheat	cytosol	26.19	25.97
HORVU6Hr1G089280.5	Barley	cytosol, mitochondrion, nucleus	29.07	25.59
CDY24410	Canola	cytosol	13.4	25.19
GSMUA_Achr1P05710_001	Banana	cytosol	24.95	24.85
HORVU3Hr1G075060.1	Barley	cytosol, peroxisome	15.05	24.58
CDY62874	Canola	nucleus	17.94	21.91
CDY46377	Canola	nucleus	17.73	21.72
CDX91230	Canola	nucleus	19.38	21.27
CDX97304	Canola	nucleus	19.38	21.17
CDX78676	Canola	plastid	16.7	18.04
CDX70680	Canola	plastid	16.91	17.79
CDX69461	Canola	plastid	17.53	17.53
CDY41073	Canola	nucleus, plastid	21.65	16.64
CDY25942	Canola	nucleus, plastid	21.44	16.56
CDY17690	Canola	nucleus, plastid	23.92	16.02
CDY40994	Canola	cytosol	18.35	15.61
CDY24442	Canola	cytosol	18.35	15.59
CDX92217	Canola	cytosol	17.94	14.85
CDY68695	Canola	nucleus	16.49	14.55
CDY66514	Canola	nucleus	18.76	14.13

Protein Annotations

EnsemblPlants:CDX84525	EnsemblPlantsGene:GSBRNA2T00141761001	Gene3D:3.10.20.90	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR000270	InterPro:PB1_dom	PANTHER:PTHR31066	PANTHER:PTHR31066:SF2	PFAM:PF00564	ProteinID:CDX84525
ProteinID:CDX84525.1	SEG:seg	SMART:SM00666	SUPFAM:SSF54277	UniParc:UPI0004EF27B1	MapMan:35.2

Description

BnaC03g49750D

Coordinates

chrLK031837:-:1614518..1615975

Molecular Weight (calculated)

52872.8 Da

IEP (calculated)

6.450

GRAVY (calculated)

-0.730

Length

485 amino acids

Sequence
(BLAST)

001: MEKFSYNSYP DSTDSSPRSR EIDFDNPPPW DDQNHHHNHQ QQTQSYKVKF MCSYNGKIQP RPHDNQLTYV NGETKILSVD RGIRFPVLAS KLSAVCGEGG
101: GDVLFKYQLP GEDLDALISV TNDDDLEHMM HEYDRLLRVS SKPARMRLFL FPSASSGGFG SEGSTQSDRD RFVEALNTVR SRPESEKSVT APPSNADFLF
201: GSEKVVSSPP PQPPHEVKLP VPVALEPPLF NDPRVIQQEA VYRRKSEDIG GGYFSPTYAA QNPAPPPPPQ PTIPLTNQQA PPVTFWQGSH NNNPGGVFPT
301: TAPGLGVPEQ PVYMIPSPSP TPHPGSVYHA PPQQPQGVMR PVVTGQVNQG GYYPYREQHQ PAYSMTQPPV GVAKGQPQQQ QQQQQAPLPF TSGPPPPQPQ
401: YSAVPPPQQV VGLADTRGYT QVTYAGGMGK QVYYTDAPPP GPPQYHGIGL PVTGGMSELR TGPDGKLVAM NMAPKVSSQN SDSAV

Best Arabidopsis Sequence Match ( AT5G64430.1 )
(BLAST)

001: MEKFSYNSYP DSTDSSPRSR EIEFDNPPPP WDDQNQNQQQ HSYKVKFMCS YGGKIQPRPH DNQLTYVNGE TKILSVDRGI RFPVLASKLS TVCGGGDGGG
101: GEVTFKYQLP GEDLDALISV TNDDDLEHMM HEYDRLLRLS SKPARMRLFL FPASSGFGSQ SSTQSDRDRF VEALNTVPRL SESEKSVTAP PNNADFLFGS
201: EKVAAPPPPP PAEVKLPVPV ALEPPLFNDP RVIQPDHVVN PMEIQRQMQE FQRMHIRDQE QQQQQEAVYR RKSNEDGLIE TGGGYFSPPY IQNPAPPPPQ
301: QTIPQTNPQA PPMTTFWQGN HNPGVVFPTT THGLGLPEQP VYMIPSPSPS PVYHAPPPPQ PQGVIRPILT GQVNQGGYYP QVQRVASDTY REPHQSPYNV
401: AQPLQAPIGT KAAQQQQPPP PQPFTSGPPP PQYTAVPPPR QVVGLPDTSA YTQVTYTGGM GKQVYYTEAP PPQYHGVGLP VTGMSELRTG PDGKLVAMNM
501: APKVSSQSSD SAV

Arabidopsis Description

At5g64430 [Source:UniProtKB/TrEMBL;Acc:Q9FGF3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.