Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY16375 | Canola | nucleus | 96.45 | 96.45 |
| CDY21444 | Canola | mitochondrion | 75.89 | 81.06 |
| CDX83177 | Canola | mitochondrion | 75.89 | 80.45 |
| AT5G49920.1 | Thale cress | nucleus | 75.53 | 73.96 |
| KRH06059 | Soybean | nucleus | 40.43 | 42.54 |
| KRH26304 | Soybean | nucleus | 39.36 | 42.53 |
| CDY66304 | Canola | cytosol | 21.63 | 36.75 |
| CDY61217 | Canola | cytosol, mitochondrion | 21.28 | 36.14 |
| CDY28543 | Canola | plastid | 22.34 | 35.8 |
| CDY48987 | Canola | plastid | 22.7 | 35.75 |
| CDX83621 | Canola | mitochondrion | 22.34 | 34.81 |
| CDY13638 | Canola | mitochondrion | 22.34 | 34.81 |
| PGSC0003DMT400097584 | Potato | nucleus | 45.39 | 34.78 |
| CDY39571 | Canola | plastid | 21.28 | 32.79 |
| CDY48161 | Canola | plastid | 20.92 | 32.24 |
| VIT_12s0035g01050.t01 | Wine grape | extracellular, golgi | 43.97 | 32.04 |
| CDY41501 | Canola | cytosol | 21.28 | 31.75 |
| CDY72321 | Canola | plastid | 19.86 | 31.28 |
| CDX84387 | Canola | nucleus | 21.63 | 31.12 |
| CDY20093 | Canola | extracellular, plasma membrane | 21.28 | 30.93 |
| CDY48129 | Canola | cytosol, nucleus, plastid | 20.57 | 30.37 |
| GSMUA_Achr11P... | Banana | plastid | 29.08 | 26.71 |
| GSMUA_Achr3P21900_001 | Banana | nucleus | 33.69 | 25.82 |
| TraesCS1A01G266900.1 | Wheat | nucleus | 29.79 | 23.01 |
| TraesCS1D01G267100.1 | Wheat | nucleus | 29.79 | 22.95 |
| CDY31319 | Canola | nucleus | 22.7 | 22.94 |
| OQU78054 | Sorghum | cytosol | 29.43 | 22.68 |
| Os05t0427100-01 | Rice | cytosol | 29.43 | 22.68 |
| Zm00001d010214_P003 | Maize | cytosol | 30.14 | 21.68 |
| TraesCS1B01G277800.1 | Wheat | cytosol, mitochondrion | 29.79 | 20.69 |
| CDY24410 | Canola | cytosol | 18.09 | 19.77 |
| CDY36115 | Canola | cytosol, nucleus, vacuole | 18.09 | 19.69 |
| HORVU1Hr1G065470.6 | Barley | mitochondrion | 29.79 | 19.35 |
| CDY62874 | Canola | nucleus | 23.4 | 16.62 |
| CDY46377 | Canola | nucleus | 23.05 | 16.41 |
| CDY58263 | Canola | nucleus | 27.3 | 16.08 |
| CDX84525 | Canola | nucleus | 27.3 | 15.88 |
| CDX97304 | Canola | nucleus | 24.82 | 15.77 |
| CDX91230 | Canola | nucleus | 24.47 | 15.61 |
| CDY46804 | Canola | nucleus | 25.18 | 14.92 |
| CDY21590 | Canola | nucleus | 24.47 | 14.53 |
| CDX69896 | Canola | nucleus | 24.11 | 14.47 |
| CDX78676 | Canola | plastid | 19.5 | 12.25 |
| CDX70680 | Canola | plastid | 19.5 | 11.93 |
| CDY40994 | Canola | cytosol | 23.76 | 11.75 |
| CDY24442 | Canola | cytosol | 23.76 | 11.73 |
| CDY68695 | Canola | nucleus | 22.7 | 11.64 |
| CDX69461 | Canola | plastid | 19.86 | 11.55 |
| CDX92217 | Canola | cytosol | 23.4 | 11.26 |
| CDY25942 | Canola | nucleus, plastid | 23.05 | 10.35 |
| CDY66514 | Canola | nucleus | 23.05 | 10.09 |
| CDY41073 | Canola | nucleus, plastid | 22.34 | 9.98 |
| CDY17690 | Canola | nucleus, plastid | 23.76 | 9.25 |
Protein Annotations
| EnsemblPlants:CDX91540 | EnsemblPlantsGene:GSBRNA2T00152923001 | Gene3D:3.10.20.90 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR000270 | InterPro:PB1_dom | PANTHER:PTHR31066 | PANTHER:PTHR31066:SF13 | PFAM:PF00564 | ProteinID:CDX91540 |
| ProteinID:CDX91540.1 | SEG:seg | SMART:SM00666 | SUPFAM:SSF54277 | UniParc:UPI0004EEB8D5 | MapMan:35.2 |
Description
BnaC02g16200D
Coordinates
chrLK031868:-:220720..221801
Molecular Weight (calculated)
31409.5 Da
IEP (calculated)
9.093
GRAVY (calculated)
-0.621
Length
282 amino acids
Sequence
(BLAST)
(BLAST)
001: MSMGERSPRN KVKFMSSFGG KILPRPSDGL LKYVGGETRV IAVSPDITFA ELMKKLTEIT ENDVVLKYQI IPEDLDALVS VKSDEDLKHM MDEYNRHEAP
101: KLRTFLFPAN PLVLENQLGP IEPQTIEQRY IEAVNGILRK SVSLRAPIKT RPSFTLSASA SSSPRSESSP DGYNHELSET GSSYQLSRLY PMHKVQSSPN
201: ITQPHSYHHH NGYLQPPNCL TCRLRPPPSP PLVLQRGWDP PGNAHNSGGG TGNGKCGCNE ERRFWGRTGS VPQSPMNHVL RL
101: KLRTFLFPAN PLVLENQLGP IEPQTIEQRY IEAVNGILRK SVSLRAPIKT RPSFTLSASA SSSPRSESSP DGYNHELSET GSSYQLSRLY PMHKVQSSPN
201: ITQPHSYHHH NGYLQPPNCL TCRLRPPPSP PLVLQRGWDP PGNAHNSGGG TGNGKCGCNE ERRFWGRTGS VPQSPMNHVL RL
001: MAEERSPSKV KFMCSFGGRI LPRPSDSVLK YVGGETRVVA VSPDISFSEL MKKLTAITEN DIVLKYQIIP EDLDALVSVK SDEDVKHMIE EYNRHETPKL
101: RTFLFPANPV VLESQLGPIE PQTIEQRYIE AINGILRTSK SATALRAPIK TRPSFTVSTC SSPKSESPDG YSHEPPETSF QNNYQLSRLY PMHRVHSSPN
201: ISHQLQPHSH YHNHNHNAYV QPPTNYLTCR PRLPTPLEIP RGIGWDQSYT TTHNSGGGNG KYGCNDDRRF WGRASSVPQS PRNHGLRL
101: RTFLFPANPV VLESQLGPIE PQTIEQRYIE AINGILRTSK SATALRAPIK TRPSFTVSTC SSPKSESPDG YSHEPPETSF QNNYQLSRLY PMHRVHSSPN
201: ISHQLQPHSH YHNHNHNAYV QPPTNYLTCR PRLPTPLEIP RGIGWDQSYT TTHNSGGGNG KYGCNDDRRF WGRASSVPQS PRNHGLRL
Arabidopsis Description
At5g49920 [Source:UniProtKB/TrEMBL;Acc:Q9LTX8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.