Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra038608.1-P | Field mustard | nucleus | 94.39 | 95.36 |
| CDY41501 | Canola | cytosol | 91.33 | 94.71 |
| AT5G63130.2 | Thale cress | nucleus | 80.61 | 82.29 |
| CDY48129 | Canola | cytosol, nucleus, plastid | 79.08 | 81.15 |
| CDY72321 | Canola | plastid | 72.96 | 79.89 |
| CDY39571 | Canola | plastid | 60.71 | 65.03 |
| CDY48161 | Canola | plastid | 60.2 | 64.48 |
| KRH54323 | Soybean | cytosol, nucleus, plastid | 46.43 | 48.92 |
| VIT_17s0000g09190.t01 | Wine grape | cytosol, nucleus, plastid | 38.27 | 47.17 |
| KRH63619 | Soybean | plastid | 46.43 | 46.91 |
| CDY66304 | Canola | cytosol | 37.24 | 43.98 |
| CDY61217 | Canola | cytosol, mitochondrion | 37.24 | 43.98 |
| PGSC0003DMT400069641 | Potato | mitochondrion | 38.78 | 43.93 |
| CDY28543 | Canola | plastid | 39.29 | 43.75 |
| CDX83621 | Canola | mitochondrion | 40.31 | 43.65 |
| CDY48987 | Canola | plastid | 39.29 | 43.02 |
| KRH03222 | Soybean | cytosol | 43.37 | 42.93 |
| Solyc06g071750.2.1 | Tomato | plastid | 39.8 | 40.41 |
| CDY13638 | Canola | mitochondrion | 36.73 | 39.78 |
| PGSC0003DMT400046652 | Potato | plastid | 39.8 | 39.39 |
| CDY20093 | Canola | extracellular, plasma membrane | 37.24 | 37.63 |
| CDX91540 | Canola | nucleus | 31.12 | 21.63 |
| CDY21444 | Canola | mitochondrion | 29.08 | 21.59 |
| CDY16375 | Canola | nucleus | 30.61 | 21.28 |
| CDX83177 | Canola | mitochondrion | 28.57 | 21.05 |
| CDY36115 | Canola | cytosol, nucleus, vacuole | 25.51 | 19.3 |
| CDY24410 | Canola | cytosol | 24.49 | 18.6 |
| CDY31319 | Canola | nucleus | 26.02 | 18.28 |
| CDY62874 | Canola | nucleus | 27.55 | 13.6 |
| CDY46377 | Canola | nucleus | 27.04 | 13.38 |
| CDX91230 | Canola | nucleus | 27.55 | 12.22 |
| CDX97304 | Canola | nucleus | 27.55 | 12.16 |
| CDY46804 | Canola | nucleus | 28.57 | 11.76 |
| CDX84525 | Canola | nucleus | 28.57 | 11.55 |
| CDY58263 | Canola | nucleus | 28.06 | 11.48 |
| CDX69896 | Canola | nucleus | 27.04 | 11.28 |
| CDY21590 | Canola | nucleus | 27.04 | 11.16 |
| CDX78676 | Canola | plastid | 24.49 | 10.69 |
| CDX70680 | Canola | plastid | 25.0 | 10.63 |
| CDY25942 | Canola | nucleus, plastid | 32.14 | 10.03 |
| CDX69461 | Canola | plastid | 24.49 | 9.9 |
| CDY41073 | Canola | nucleus, plastid | 31.12 | 9.67 |
| CDY40994 | Canola | cytosol | 27.55 | 9.47 |
| CDY24442 | Canola | cytosol | 27.55 | 9.46 |
| CDX92217 | Canola | cytosol | 28.06 | 9.39 |
| CDY68695 | Canola | nucleus | 26.02 | 9.27 |
| CDY17690 | Canola | nucleus, plastid | 32.14 | 8.7 |
| CDY66514 | Canola | nucleus | 26.02 | 7.92 |
Protein Annotations
| EnsemblPlants:CDX84387 | EnsemblPlantsGene:GSBRNA2T00141554001 | Gene3D:3.10.20.90 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR000270 | InterPro:PB1_dom | PANTHER:PTHR31066 | PANTHER:PTHR31066:SF10 | PFAM:PF00564 | ProteinID:CDX84387 |
| ProteinID:CDX84387.1 | SEG:seg | SMART:SM00666 | SUPFAM:SSF54277 | UniParc:UPI0004EEA3D0 | MapMan:35.2 |
Description
BnaC03g51130D
Coordinates
chrLK031837:+:598868..599574
Molecular Weight (calculated)
21797.7 Da
IEP (calculated)
9.808
GRAVY (calculated)
-0.591
Length
196 amino acids
Sequence
(BLAST)
(BLAST)
001: MVAVDVKEKN SGSSLKFLCS YGGRILPRST DGKLRYVGGH TRVLSVHRSI SFEELMKKLF EFCGYSVDLR CQLPNGDLET LISVKSDEDL ANIVEEYDRV
101: SGAKIRAVLS PPRAHRQGSP SSSSSDRSPK SPFSVSRSPF SVTPSPPNSP SSAYGRYLQS RYCLPPTDLS RRSNHRYGES YCYACRGHKN SSLIRH
101: SGAKIRAVLS PPRAHRQGSP SSSSSDRSPK SPFSVSRSPF SVTPSPPNSP SSAYGRYLQS RYCLPPTDLS RRSNHRYGES YCYACRGHKN SSLIRH
001: MVAVDYTEKN SGSSLKFLCS YGGRILPRST DGKLRYVGGH TRVLSVDRSI SFSELMKKLY EFCGYSVDLR CQLPNGDLET LISVKSEEEL AEIVEEYDRI
101: CGAKIRAVLS PPRSSHKTES SPSSSGDRSP KSPFSVTPSP PNSPSPAYGR YLQSRYCLPS TDLPPRRYIQ RAEESHCCYA CRVHKDSRLV WH
101: CGAKIRAVLS PPRSSHKTES SPSSSGDRSP KSPFSVTPSP PNSPSPAYGR YLQSRYCLPS TDLPPRRYIQ RAEESHCCYA CRVHKDSRLV WH
Arabidopsis Description
At5g63130 [Source:UniProtKB/TrEMBL;Acc:Q9FML0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.