Factsheet for Solyc06g071750.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
cytosol 2
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g106320.2.1
Solyc06g073150.2.1
Solyc11g017300.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G48240.1	Solyc06g073150.2.1	AT1G22920.1	21798944
AT3G48240.1	Solyc11g017300.1.1	AT1G22920.1	21798944
AT3G48240.1	Solyc01g106320.2.1	AT5G64430.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400069641	Potato	mitochondrion	80.31	89.6
VIT_17s0000g09190.t01	Wine grape	cytosol, nucleus, plastid	40.41	49.06
Bra018071.1-P	Field mustard	plastid	41.97	44.26
CDY39571	Canola	plastid	41.45	43.72
CDY48161	Canola	plastid	41.45	43.72
CDY41501	Canola	cytosol	40.41	41.27
AT3G48240.1	Thale cress	cytosol, nucleus, plastid	38.34	41.11
CDX84387	Canola	nucleus	40.41	39.8
KRH54323	Soybean	cytosol, nucleus, plastid	38.34	39.78
Bra038608.1-P	Field mustard	nucleus	39.9	39.69
KRH63619	Soybean	plastid	39.38	39.18
AT5G63130.2	Thale cress	nucleus	38.86	39.06
CDY48129	Canola	cytosol, nucleus, plastid	37.82	38.22
KRH03222	Soybean	cytosol	38.86	37.88
Solyc05g013530.2.1	Tomato	plastid	41.97	36.99
CDY72321	Canola	plastid	33.16	35.75
Bra035855.1-P	Field mustard	cytosol	35.23	35.6
Solyc02g091670.1.1	Tomato	cytosol	25.39	18.15
Solyc02g079360.1.1	Tomato	nucleus	25.91	12.99
Solyc04g076820.1.1	Tomato	plastid	30.05	12.24
Solyc01g106320.2.1	Tomato	extracellular	27.98	10.95
Solyc02g086360.2.1	Tomato	cytosol	30.05	10.41
Solyc04g007460.2.1	Tomato	plastid	32.12	9.09
Solyc05g008830.2.1	Tomato	nucleus	30.05	9.02
Solyc03g118870.2.1	Tomato	nucleus	28.5	8.63

Protein Annotations

EnsemblPlants:Solyc06g071750.2.1	EnsemblPlantsGene:Solyc06g071750.2	Gene3D:3.10.20.90	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR000270	InterPro:PB1_dom	PANTHER:PTHR31066	PANTHER:PTHR31066:SF1	PFAM:PF00564	SMART:SM00666
SUPFAM:SSF54277	UniParc:UPI00027672D3	UniProt:K4C8P7	MapMan:35.2	:	:

Description

No Description!

Coordinates

chr6:+:44195740..44196825

Molecular Weight (calculated)

21524.0 Da

IEP (calculated)

8.673

GRAVY (calculated)

-0.186

Length

193 amino acids

Sequence
(BLAST)

001: MSQSTQIVKF LYSYGGRILP RPSDGTLRYI GGFTRVLSVD RSISFAELMV KFGELYGSSM RLKCKMPTED LDVLVSITCD EDLANVIEEY DRVSAMTNTE
101: MKIRALLSPI NLPKKDSRPS SPMSCFDFAA SSLKPGKFVQ FNSPPSYAAA RRLFSPVVGY PTGRRTDGEE LYYPYCGQAG VKPLYNVVPI HCQ

Best Arabidopsis Sequence Match ( AT3G48240.1 )
(BLAST)

001: MVAVAENQKT KNSLKFLCSY GGRILPRSID GKLRYVGGFT RVLSVHHSIS FTELTMKLEE FCGYSVELKC QLPNGDLETL ISVKSDEDLV NIVEEYDRVY
101: GGKIRAILSP PKQMSPRSSG GGGDLSPKSP FSVVASPSPP RYCVAPPTEN LLSRFRMRTG EYSRCCNCRV PNRDSKLIWQ

Arabidopsis Description

At3g48240 [Source:UniProtKB/TrEMBL;Acc:Q9STK4]
SUBAcon: [cytosol,nucleus,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.