Factsheet for PGSC0003DMT400069641

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
cytosol 2
mitochondrion 4
golgi 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400008036
PGSC0003DMT400023896
PGSC0003DMT400069203

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G48240.1	PGSC0003DMT400023896	AT1G22920.1	21798944
AT3G48240.1	PGSC0003DMT400069203	AT1G22920.1	21798944
AT3G48240.1	PGSC0003DMT400008036	AT5G64430.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g071750.2.1	Tomato	plastid	89.6	80.31
PGSC0003DMT400046652	Potato	plastid	73.99	64.65
VIT_17s0000g09190.t01	Wine grape	cytosol, nucleus, plastid	46.82	50.94
Bra018071.1-P	Field mustard	plastid	45.09	42.62
CDY39571	Canola	plastid	45.09	42.62
CDY48161	Canola	plastid	44.51	42.08
CDY48129	Canola	cytosol, nucleus, plastid	44.51	40.31
CDY41501	Canola	cytosol	43.93	40.21
AT3G48240.1	Thale cress	cytosol, nucleus, plastid	41.62	40.0
KRH54323	Soybean	cytosol, nucleus, plastid	42.77	39.78
KRH63619	Soybean	plastid	44.51	39.69
AT5G63130.2	Thale cress	nucleus	43.35	39.06
CDX84387	Canola	nucleus	43.93	38.78
Bra038608.1-P	Field mustard	nucleus	43.35	38.66
KRH03222	Soybean	cytosol	42.77	37.37
CDY72321	Canola	plastid	38.15	36.87
Bra035855.1-P	Field mustard	cytosol	40.46	36.65
PGSC0003DMT400047888	Potato	cytosol, mitochondrion, plastid	44.51	32.77
PGSC0003DMT400078796	Potato	cytosol	28.32	18.15
PGSC0003DMT400097584	Potato	nucleus	32.37	15.22
PGSC0003DMT400016330	Potato	nucleus	31.79	11.98
PGSC0003DMT400057688	Potato	nucleus	27.17	11.3
PGSC0003DMT400008036	Potato	nucleus	30.64	10.79
PGSC0003DMT400067817	Potato	cytosol	30.64	9.52
PGSC0003DMT400015310	Potato	nucleus	34.1	8.95
PGSC0003DMT400014442	Potato	nucleus	30.64	7.74

Protein Annotations

EnsemblPlants:PGSC0003DMT400069641	EnsemblPlantsGene:PGSC0003DMG400027075	EntrezGene:102585593	Gene3D:3.10.20.90	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR000270	InterPro:PB1_dom	PANTHER:PTHR31066	PANTHER:PTHR31066:SF1	PFAM:PF00564
PGSC:PGSC0003DMG400027075	RefSeq:XP_006347429.1	SEG:seg	SMART:SM00666	SUPFAM:SSF54277	UniParc:UPI0002957034
UniProt:M1CKU2	MapMan:35.2	:	:	:	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400027075]

Coordinates

chr6:+:52575120..52576233

Molecular Weight (calculated)

19458.7 Da

IEP (calculated)

9.732

GRAVY (calculated)

-0.235

Length

173 amino acids

Sequence
(BLAST)

001: MSHSRQIVKF LYSYGGRILP RRSDGTLRYI GGFTRVLSVD RSISVAELMV KFGELCGSSM HLKCKLPTED LDVLVSITCD EDLANVIEEY DRVSAMTNTE
101: IKIKALLSPI NLPKKKSRPS SPMSCFDFPA SNLKLGKLGR FNSPPSYAAR RLFSPVVGYP IGRRTDREEL YYP

Best Arabidopsis Sequence Match ( AT3G48240.1 )
(BLAST)

001: MVAVAENQKT KNSLKFLCSY GGRILPRSID GKLRYVGGFT RVLSVHHSIS FTELTMKLEE FCGYSVELKC QLPNGDLETL ISVKSDEDLV NIVEEYDRVY
101: GGKIRAILSP PKQMSPRSSG GGGDLSPKSP FSVVASPSPP RYCVAPPTEN LLSRFRMRTG EYSRCCNCRV PNRDSKLIWQ

Arabidopsis Description

At3g48240 [Source:UniProtKB/TrEMBL;Acc:Q9STK4]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.