Factsheet for Bra018071.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra012351.1-P
Bra024295.1-P
Bra024548.1-P
Bra031918.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G48240.1	Bra012351.1-P	AT1G22920.1	21798944
AT3G48240.1	Bra024548.1-P	AT1G22920.1	21798944
AT3G48240.1	Bra024295.1-P	AT5G64430.1	21798944
AT3G48240.1	Bra031918.1-P	AT5G64430.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY48161	Canola	plastid	97.81	97.81
CDY39571	Canola	plastid	96.17	96.17
AT3G48240.1	Thale cress	cytosol, nucleus, plastid	75.96	77.22
Bra035855.1-P	Field mustard	cytosol	63.93	61.26
Bra038608.1-P	Field mustard	nucleus	62.3	58.76
PGSC0003DMT400069641	Potato	mitochondrion	42.62	45.09
VIT_17s0000g09190.t01	Wine grape	cytosol, nucleus, plastid	38.8	44.65
KRH54323	Soybean	cytosol, nucleus, plastid	43.72	43.01
KRH63619	Soybean	plastid	44.81	42.27
Solyc06g071750.2.1	Tomato	plastid	44.26	41.97
Bra032936.1-P	Field mustard	plastid	40.98	41.9
Bra016197.1-P	Field mustard	mitochondrion	37.7	41.57
PGSC0003DMT400046652	Potato	plastid	43.72	40.4
Bra025209.1-P	Field mustard	mitochondrion	39.89	40.33
KRH03222	Soybean	cytosol	42.62	39.39
Bra022508.1-P	Field mustard	nucleus	32.79	21.28
Bra000599.1-P	Field mustard	mitochondrion	30.6	21.13
Bra010988.1-P	Field mustard	cytosol, nucleus, plasma membrane	25.68	18.08
Bra006344.1-P	Field mustard	plastid	24.04	12.39
Bra024295.1-P	Field mustard	nucleus	27.87	11.75
Bra029559.1-P	Field mustard	nucleus	25.14	11.65
Bra018513.1-P	Field mustard	nucleus	26.78	11.04
Bra031918.1-P	Field mustard	nucleus	27.32	10.55
Bra009393.1-P	Field mustard	nucleus	27.32	10.55
Bra008633.1-P	Field mustard	plastid	25.14	9.48
Bra022297.1-P	Field mustard	nucleus	27.32	8.73
Bra017462.1-P	Field mustard	cytosol, plastid	30.6	8.72
Bra022296.1-P	Field mustard	cytosol	27.32	8.45
Bra024899.1-P	Field mustard	nucleus, plastid	31.15	7.85
Bra037596.1-P	Field mustard	nucleus	26.78	7.62

Protein Annotations

EnsemblPlants:Bra018071.1	EnsemblPlants:Bra018071.1-P	EnsemblPlantsGene:Bra018071	Gene3D:3.10.20.90	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR000270	InterPro:PB1_dom	PANTHER:PTHR31066	PANTHER:PTHR31066:SF10	PFAM:PF00564
SEG:seg	SMART:SM00666	SUPFAM:SSF54277	UniParc:UPI000253F31A	UniProt:M4DNI4	MapMan:35.2

Description

AT3G48240 (E=9e-053) | octicosapeptide/Phox/Bem1p (PB1) domain-containing protein

Coordinates

chrA06:-:10003588..10004210

Molecular Weight (calculated)

20440.5 Da

IEP (calculated)

9.196

GRAVY (calculated)

-0.393

Length

183 amino acids

Sequence
(BLAST)

001: MVTTKKSESN LKFLCSYGGR ILPRSIDGKL RYVGGFTRVL SVVDSISFSE LMVKLEEFCG YAVDLKCQLP DGDLETLISV KSDEDLTNIV EEYNRVYGGK
101: IRAVLSTPKQ VSPPSSGGGG DVSPKSPFSV VASPSPPPAY RRFPQARYQM ENLQSGIFRK RAEEYSRCCK CRVQNRDSKL IWH

Best Arabidopsis Sequence Match ( AT3G48240.1 )
(BLAST)

001: MVAVAENQKT KNSLKFLCSY GGRILPRSID GKLRYVGGFT RVLSVHHSIS FTELTMKLEE FCGYSVELKC QLPNGDLETL ISVKSDEDLV NIVEEYDRVY
101: GGKIRAILSP PKQMSPRSSG GGGDLSPKSP FSVVASPSPP RYCVAPPTEN LLSRFRMRTG EYSRCCNCRV PNRDSKLIWQ

Arabidopsis Description

At3g48240 [Source:UniProtKB/TrEMBL;Acc:Q9STK4]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.