Factsheet for VIT_17s0000g09190.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 3
cytosol 1
peroxisome 1
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_03s0038g04360.t01
VIT_03s0097g00600.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G48240.1	VIT_03s0038g04360.t01	AT1G22920.1	21798944
AT3G48240.1	VIT_03s0097g00600.t01	AT5G64430.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400069641	Potato	mitochondrion	50.94	46.82
VIT_00s0291g00050.t01	Wine grape	plastid	55.35	45.13
KRH54323	Soybean	cytosol, nucleus, plastid	51.57	44.09
KRH63619	Soybean	plastid	52.83	43.3
PGSC0003DMT400046652	Potato	plastid	52.83	42.42
CDY48129	Canola	cytosol, nucleus, plastid	49.69	41.36
Solyc06g071750.2.1	Tomato	plastid	49.06	40.41
CDY41501	Canola	cytosol	47.8	40.21
CDY72321	Canola	plastid	44.65	39.66
AT5G63130.2	Thale cress	nucleus	47.8	39.58
KRH03222	Soybean	cytosol	49.06	39.39
AT3G48240.1	Thale cress	cytosol, nucleus, plastid	44.03	38.89
CDY39571	Canola	plastid	44.65	38.8
Bra018071.1-P	Field mustard	plastid	44.65	38.8
CDY48161	Canola	plastid	44.65	38.8
Bra038608.1-P	Field mustard	nucleus	47.17	38.66
CDX84387	Canola	nucleus	47.17	38.27
Bra035855.1-P	Field mustard	cytosol	45.28	37.7
VIT_14s0068g01740.t01	Wine grape	cytosol	12.58	27.4
VIT_00s0203g00140.t01	Wine grape	cytosol, nucleus, plastid	32.7	18.18
VIT_17s0000g07170.t01	Wine grape	cytosol	18.24	16.57
VIT_12s0035g01050.t01	Wine grape	extracellular, golgi	34.59	14.21
VIT_02s0033g00640.t01	Wine grape	cytosol	15.09	13.71
VIT_03s0097g00600.t01	Wine grape	nucleus	33.33	11.35
VIT_18s0001g08010.t01	Wine grape	nucleus	33.33	10.79
VIT_14s0006g02490.t01	Wine grape	nucleus	31.45	9.63
VIT_01s0011g04140.t01	Wine grape	nucleus	35.22	8.03
VIT_17s0000g03180.t01	Wine grape	nucleus	32.08	7.99

Protein Annotations

ArrayExpress:VIT_17s0000g09190	EMBL:FN594950	EnsemblPlants:VIT_17s0000g09190.t01	EnsemblPlantsGene:VIT_17s0000g09190	Gene3D:3.10.20.90	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR000270	InterPro:PB1_dom	PANTHER:PTHR31066	PANTHER:PTHR31066:SF10
PFAM:PF00564	ProteinID:CCB42940	ProteinID:CCB42940.1	SEG:seg	SMART:SM00666	SUPFAM:SSF54277
UniParc:UPI0002108090	UniProt:F6GSH5	MapMan:35.2	:	:	:

Description

No Description!

Coordinates

chr17:+:10769971..10771002

Molecular Weight (calculated)

17660.6 Da

IEP (calculated)

10.058

GRAVY (calculated)

-0.048

Length

159 amino acids

Sequence
(BLAST)

001: MGGDLDSASN RIIKFLYSYG GKILPRRIDG KLRYVGGHTR VLAVDRSISY AELMVKLGEL CGSSVTLRCQ LPKEDLDVLV TVTSDEELAN VIDEYHRASS
101: SCSKIRAVLS PPKSLKTISP VSSTTSSPLR LCWLTVILVL VQYLRLRRRI DGPPVSRRQ

Best Arabidopsis Sequence Match ( AT3G26510.1 )
(BLAST)

001: MVTSPTNSTI KFLCSYGGKI LPRYPDGKLR YNGGHTRVLA VPRSVSFSEL ASKMAEMCGG VGGSITVTIR CQLPTEDLDA LVSITSDEDL VNLIEEYDLV
101: SSSSPMKIRV FLNPPKSAAG SKKSPPPLAL PSSTTTSSSS TTSSTSSSPR SPSLSKPPLP PSPPRITTVT KNPCYGCYVH RNSRNIYLVH NGNHWQ

Arabidopsis Description

Octicosapeptide/Phox/Bem1p family protein [Source:UniProtKB/TrEMBL;Acc:Q27GK5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.