Factsheet for VIT_02s0033g00640.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
golgi 1
plastid 1
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_14s0068g01740.t01	Wine grape	cytosol	39.43	94.52
VIT_17s0000g07170.t01	Wine grape	cytosol	91.43	91.43
VIT_18s0001g08010.t01	Wine grape	nucleus	79.43	28.31
VIT_00s0203g00140.t01	Wine grape	cytosol, nucleus, plastid	32.0	19.58
VIT_03s0097g00600.t01	Wine grape	nucleus	46.86	17.56
Solyc02g091670.1.1	Tomato	cytosol	25.71	16.67
HORVU3Hr1G075060.1	Barley	cytosol, peroxisome	28.0	16.5
GSMUA_Achr1P20460_001	Banana	cytosol, plastid	37.71	15.94
PGSC0003DMT400078796	Potato	cytosol	24.57	15.93
VIT_17s0000g09190.t01	Wine grape	cytosol, nucleus, plastid	13.71	15.09
VIT_00s0291g00050.t01	Wine grape	plastid	16.57	14.87
Zm00001d051939_P001	Maize	cytosol	38.29	12.45
EES07730	Sorghum	cytosol	40.0	12.37
Zm00001d018447_P001	Maize	extracellular	36.57	11.68
TraesCS6D01G365200.1	Wheat	cytosol	32.0	11.45
TraesCS6A01G380500.1	Wheat	cytosol	34.29	11.28
TraesCS6B01G419500.1	Wheat	cytosol	31.43	11.16
HORVU6Hr1G089280.5	Barley	cytosol, mitochondrion, nucleus	34.29	10.89
GSMUA_Achr1P05710_001	Banana	cytosol	30.29	10.88
VIT_12s0035g01050.t01	Wine grape	extracellular, golgi	20.57	9.3
VIT_14s0006g02490.t01	Wine grape	nucleus	26.29	8.86
VIT_01s0011g04140.t01	Wine grape	nucleus	33.71	8.46
VIT_17s0000g03180.t01	Wine grape	nucleus	30.86	8.46

Protein Annotations

EntrezGene:100852522	wikigene:100852522	MapMan:35.2	EMBL:AM456228	EMBL:AM471030	ProteinID:CAN61268
ProteinID:CAN61268.1	ProteinID:CAN66016	ProteinID:CAN66016.1	ProteinID:CBI37416	ProteinID:CBI37416.3	UniProt:D7U3U7
EMBL:FN596505	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR000270	EntrezGene:LOC100852522
wikigene:LOC100852522	InterPro:PB1_dom	PFAM:PF00564	PANTHER:PTHR31066	PANTHER:PTHR31066:SF5	SMART:SM00666
SUPFAM:SSF54277	UniParc:UPI0001BE463B	ArrayExpress:VIT_02s0033g00640	EnsemblPlantsGene:VIT_02s0033g00640	EnsemblPlants:VIT_02s0033g00640.t01	RefSeq:XP_003631509
RefSeq:XP_003631509.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr2:+:15143097..15143624

Molecular Weight (calculated)

19721.5 Da

IEP (calculated)

4.736

GRAVY (calculated)

-0.409

Length

175 amino acids

Sequence
(BLAST)

001: MPVAESYKDG WARVRRRVEN RTWIGMDLEG FVRTLPWTSG EVCLKYQLPG EDLDALISIT NDEDLEHMML EHDRLCRPSN KQARLGLFLF PLTPPASTSF
101: GSNETKSERQ WFVDSLNSVQ IQPLEGSSLQ AAASETNPDF LFGLDKGLAP PPLVKLLPKD YLVRSDPGSE IPYKL

Best Arabidopsis Sequence Match ( AT5G64430.1 )
(BLAST)

001: MEKFSYNSYP DSTDSSPRSR EIEFDNPPPP WDDQNQNQQQ HSYKVKFMCS YGGKIQPRPH DNQLTYVNGE TKILSVDRGI RFPVLASKLS TVCGGGDGGG
101: GEVTFKYQLP GEDLDALISV TNDDDLEHMM HEYDRLLRLS SKPARMRLFL FPASSGFGSQ SSTQSDRDRF VEALNTVPRL SESEKSVTAP PNNADFLFGS
201: EKVAAPPPPP PAEVKLPVPV ALEPPLFNDP RVIQPDHVVN PMEIQRQMQE FQRMHIRDQE QQQQQEAVYR RKSNEDGLIE TGGGYFSPPY IQNPAPPPPQ
301: QTIPQTNPQA PPMTTFWQGN HNPGVVFPTT THGLGLPEQP VYMIPSPSPS PVYHAPPPPQ PQGVIRPILT GQVNQGGYYP QVQRVASDTY REPHQSPYNV
401: AQPLQAPIGT KAAQQQQPPP PQPFTSGPPP PQYTAVPPPR QVVGLPDTSA YTQVTYTGGM GKQVYYTEAP PPQYHGVGLP VTGMSELRTG PDGKLVAMNM
501: APKVSSQSSD SAV

Arabidopsis Description

At5g64430 [Source:UniProtKB/TrEMBL;Acc:Q9FGF3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.