Factsheet for GSMUA_Achr1P20460_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, plastid

Predictor Summary:

nucleus 3
plastid 4
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr1P19920_001
GSMUA_Achr3P11230_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G64430.1	GSMUA_Achr1P19920_001	AT3G51180.1	21798944
AT5G64430.1	GSMUA_Achr3P11230_001	AT3G51180.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH57272	Soybean	cytosol	12.56	56.52
GSMUA_Achr1P05710_001	Banana	cytosol	49.03	41.68
VIT_14s0068g01740.t01	Wine grape	cytosol	7.0	39.73
VIT_17s0000g07170.t01	Wine grape	cytosol	16.43	38.86
VIT_02s0033g00640.t01	Wine grape	cytosol	15.94	37.71
CDY31319	Canola	nucleus	22.71	33.69
GSMUA_Achr3P19440_001	Banana	plastid	12.56	32.3
Solyc02g091670.1.1	Tomato	cytosol	20.53	31.48
KRH16903	Soybean	nucleus	26.81	31.36
PGSC0003DMT400078796	Potato	cytosol	20.05	30.74
KRH72507	Soybean	cytosol, nucleus, peroxisome	26.57	30.64
VIT_18s0001g08010.t01	Wine grape	nucleus	35.75	30.14
PGSC0003DMT400016330	Potato	nucleus	31.64	28.54
VIT_03s0097g00600.t01	Wine grape	nucleus	32.13	28.48
KRH49860	Soybean	nucleus	32.13	28.12
KRH21700	Soybean	nucleus	29.47	27.73
KRH42038	Soybean	cytosol	31.64	27.52
HORVU3Hr1G075060.1	Barley	cytosol, peroxisome	19.57	27.27
Zm00001d051939_P001	Maize	cytosol	35.27	27.14
Solyc04g076820.1.1	Tomato	plastid	30.92	27.0
KRH10652	Soybean	cytosol	28.99	26.91
GSMUA_Achr4P33650_001	Banana	mitochondrion	19.57	26.13
TraesCS6D01G365200.1	Wheat	cytosol	30.43	25.77
TraesCS6B01G419500.1	Wheat	cytosol	30.68	25.76
PGSC0003DMT400008036	Potato	nucleus	30.43	25.66
CDY46804	Canola	nucleus	29.47	25.63
EES07730	Sorghum	cytosol	34.78	25.44
GSMUA_Achr10P...	Banana	cytosol	12.56	25.24
GSMUA_Achr11P...	Banana	cytosol, nucleus, plastid	13.29	25.23
Bra024295.1-P	Field mustard	nucleus	26.33	25.12
TraesCS6A01G380500.1	Wheat	cytosol	32.13	25.0
Solyc01g106320.2.1	Tomato	extracellular	29.71	24.95
Bra031918.1-P	Field mustard	nucleus	28.5	24.89
Zm00001d018447_P001	Maize	extracellular	32.37	24.45
CDY21590	Canola	nucleus	28.02	24.42
AT5G64430.1	Thale cress	nucleus	29.95	24.17
Bra009393.1-P	Field mustard	nucleus	27.54	24.05
CDX69896	Canola	nucleus	27.29	24.04
CDY58263	Canola	nucleus	27.78	24.01
HORVU6Hr1G089280.5	Barley	cytosol, mitochondrion, nucleus	31.88	23.96
GSMUA_Achr8P16400_001	Banana	plastid	11.59	23.76
CDX84525	Canola	nucleus	27.54	23.51
AT5G09620.1	Thale cress	nucleus	28.74	22.41
GSMUA_Achr6P06660_001	Banana	plastid	11.84	20.25
GSMUA_Achr10P...	Banana	nucleus	14.98	18.34
GSMUA_Achr11P...	Banana	plastid	13.29	17.92
GSMUA_AchrUn_...	Banana	nucleus	16.67	17.88
GSMUA_Achr3P21900_001	Banana	nucleus	14.73	16.58
GSMUA_Achr2P07240_001	Banana	nucleus	18.36	13.82
GSMUA_Achr1P21240_001	Banana	nucleus	19.32	13.33
GSMUA_Achr8P18320_001	Banana	nucleus	16.67	13.32
GSMUA_Achr11P...	Banana	plasma membrane, vacuole	20.53	12.14
GSMUA_Achr6P09850_001	Banana	endoplasmic reticulum, extracellular	17.39	10.24

Protein Annotations

EnsemblPlants:GSMUA_Achr1P20460_001	EnsemblPlants:GSMUA_Achr1T20460_001	EnsemblPlantsGene:GSMUA_Achr1G20460_001	Gene3D:3.10.20.90	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR000270	InterPro:PB1_dom	PANTHER:PTHR31066	PANTHER:PTHR31066:SF2	PFAM:PF00564
SEG:seg	SMART:SM00666	SUPFAM:SSF54277	UniParc:UPI000296540C	UniProt:M0S1K4	MapMan:35.2

Description

Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr1G20460_001]

Coordinates

chr1:-:15396054..15397298

Molecular Weight (calculated)

44078.4 Da

IEP (calculated)

6.521

GRAVY (calculated)

-0.261

Length

414 amino acids

Sequence
(BLAST)

001: MDSPPVHLNN APPPPPQATS PCRVRLMVSY GGRIQPRRYD NSRLSYVGGE TKILSLDRSA RFPALLSKLA SITAFVSPLC LKYQLPGEDL DALVSVTDDD
101: DLDHLMAEYD LLHRTSSTKP SPRLRLFLFP VGPPPPRPSA ALLDAARSER QWFLDALNAV PAPPSPPPAP PTTLDASQSP DFLFGLDHDY LTTAVGKVTA
201: DPQSLSSVLE NLPLEAPTKP DLVKDESGKP IAGGADSVAA SPAVVSTGEI QRQSPDLDKP KMADNPPPMV PCNSSEENLP RVRAPEVIAA PPPSTAVYWQ
301: EQRGGASVGR YALSAPVGDQ TVYLIQASPA GYPAIYTAAP RVVPAKAFCE AAAPGLVSTK LVGGCGKLMT RLEAYAAATA GQVAYDRTER VVYDPSVAPT
401: YQTVTSPRSR RCGR

Best Arabidopsis Sequence Match ( AT5G64430.1 )
(BLAST)

001: MEKFSYNSYP DSTDSSPRSR EIEFDNPPPP WDDQNQNQQQ HSYKVKFMCS YGGKIQPRPH DNQLTYVNGE TKILSVDRGI RFPVLASKLS TVCGGGDGGG
101: GEVTFKYQLP GEDLDALISV TNDDDLEHMM HEYDRLLRLS SKPARMRLFL FPASSGFGSQ SSTQSDRDRF VEALNTVPRL SESEKSVTAP PNNADFLFGS
201: EKVAAPPPPP PAEVKLPVPV ALEPPLFNDP RVIQPDHVVN PMEIQRQMQE FQRMHIRDQE QQQQQEAVYR RKSNEDGLIE TGGGYFSPPY IQNPAPPPPQ
301: QTIPQTNPQA PPMTTFWQGN HNPGVVFPTT THGLGLPEQP VYMIPSPSPS PVYHAPPPPQ PQGVIRPILT GQVNQGGYYP QVQRVASDTY REPHQSPYNV
401: AQPLQAPIGT KAAQQQQPPP PQPFTSGPPP PQYTAVPPPR QVVGLPDTSA YTQVTYTGGM GKQVYYTEAP PPQYHGVGLP VTGMSELRTG PDGKLVAMNM
501: APKVSSQSSD SAV

Arabidopsis Description

At5g64430 [Source:UniProtKB/TrEMBL;Acc:Q9FGF3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.