Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d003965_P001 | Maize | mitochondrion | 13.82 | 69.09 |
| HORVU3Hr1G008310.1 | Barley | cytosol | 17.64 | 67.83 |
| GSMUA_AchrUn_... | Banana | nucleus | 46.73 | 66.58 |
| GSMUA_Achr1P21240_001 | Banana | nucleus | 70.0 | 64.17 |
| GSMUA_Achr8P18320_001 | Banana | nucleus | 56.36 | 59.85 |
| GSMUA_Achr10P... | Banana | nucleus | 36.73 | 59.76 |
| GSMUA_Achr11P... | Banana | plasma membrane, vacuole | 71.82 | 56.43 |
| GSMUA_Achr6P09850_001 | Banana | endoplasmic reticulum, extracellular | 57.45 | 44.95 |
| Zm00001d039916_P010 | Maize | nucleus | 51.64 | 43.1 |
| Os01t0139200-01 | Rice | nucleus | 52.0 | 42.62 |
| EES00348 | Sorghum | nucleus | 51.27 | 42.53 |
| TraesCS3B01G060500.1 | Wheat | cytosol | 50.73 | 42.15 |
| Zm00001d008591_P001 | Maize | mitochondrion | 50.36 | 41.65 |
| TraesCS3D01G050900.1 | Wheat | nucleus | 47.64 | 39.52 |
| TraesCS3A01G051800.1 | Wheat | nucleus | 50.55 | 39.49 |
| Bra010988.1-P | Field mustard | cytosol, nucleus, plasma membrane | 16.18 | 34.23 |
| GSMUA_Achr4P33650_001 | Banana | mitochondrion | 19.27 | 34.19 |
| CDY36115 | Canola | cytosol, nucleus, vacuole | 16.0 | 33.98 |
| HORVU3Hr1G008420.4 | Barley | cytosol, nucleus | 50.73 | 32.98 |
| CDY24410 | Canola | cytosol | 15.45 | 32.95 |
| VIT_17s0000g03180.t01 | Wine grape | nucleus | 38.0 | 32.76 |
| GSMUA_Achr3P19440_001 | Banana | plastid | 9.45 | 32.3 |
| KRH48572 | Soybean | cytosol | 36.55 | 31.36 |
| AT1G25300.1 | Thale cress | cytosol, nucleus, plasma membrane | 15.45 | 31.25 |
| KRH39133 | Soybean | cytosol | 38.0 | 31.24 |
| VIT_01s0011g04140.t01 | Wine grape | nucleus | 39.09 | 30.85 |
| VIT_14s0006g02490.t01 | Wine grape | nucleus | 28.91 | 30.64 |
| KRH35888 | Soybean | nucleus | 39.09 | 30.41 |
| Solyc03g118870.2.1 | Tomato | nucleus | 34.91 | 30.14 |
| CDY25942 | Canola | nucleus, plastid | 34.18 | 29.94 |
| Bra017462.1-P | Field mustard | cytosol, plastid | 34.91 | 29.91 |
| KRG90906 | Soybean | nucleus, plastid | 39.09 | 29.82 |
| CDY41073 | Canola | nucleus, plastid | 34.18 | 29.79 |
| PGSC0003DMT400014442 | Potato | nucleus | 37.09 | 29.78 |
| Bra024899.1-P | Field mustard | nucleus, plastid | 38.73 | 29.34 |
| AT2G01190.1 | Thale cress | nucleus, plastid | 38.18 | 29.17 |
| Bra022297.1-P | Field mustard | nucleus | 30.18 | 28.97 |
| CDY17690 | Canola | nucleus, plastid | 38.0 | 28.87 |
| PGSC0003DMT400015310 | Potato | nucleus | 34.55 | 28.83 |
| Solyc05g008830.2.1 | Tomato | nucleus | 33.27 | 28.46 |
| Solyc04g007460.2.1 | Tomato | plastid | 35.09 | 28.3 |
| KRH38173 | Soybean | nucleus | 33.45 | 28.22 |
| CDX92217 | Canola | cytosol | 30.0 | 28.16 |
| Bra022296.1-P | Field mustard | cytosol | 30.18 | 28.04 |
| CDY40994 | Canola | cytosol | 28.91 | 27.89 |
| CDY24442 | Canola | cytosol | 28.91 | 27.85 |
| CDY68695 | Canola | nucleus | 27.82 | 27.82 |
| Solyc02g086360.2.1 | Tomato | cytosol | 28.0 | 27.65 |
| PGSC0003DMT400067817 | Potato | cytosol | 27.64 | 27.29 |
| Bra006344.1-P | Field mustard | plastid | 17.27 | 26.76 |
| GSMUA_Achr10P... | Banana | cytosol | 10.0 | 26.7 |
| AT3G18230.1 | Thale cress | nucleus, plastid | 31.82 | 26.28 |
| GSMUA_Achr11P... | Banana | cytosol, nucleus, plastid | 10.36 | 26.15 |
| GSMUA_Achr8P16400_001 | Banana | plastid | 9.45 | 25.74 |
| Bra037596.1-P | Field mustard | nucleus | 30.0 | 25.66 |
| CDY66514 | Canola | nucleus | 30.0 | 25.62 |
| CDX70680 | Canola | plastid | 20.73 | 24.73 |
| AT5G16220.1 | Thale cress | plastid | 21.27 | 24.58 |
| CDX78676 | Canola | plastid | 20.0 | 24.5 |
| CDX69461 | Canola | plastid | 21.45 | 24.33 |
| Bra008633.1-P | Field mustard | plastid | 21.45 | 24.33 |
| GSMUA_Achr6P06660_001 | Banana | plastid | 9.64 | 21.9 |
| GSMUA_Achr1P20460_001 | Banana | cytosol, plastid | 13.82 | 18.36 |
| GSMUA_Achr3P21900_001 | Banana | nucleus | 11.64 | 17.39 |
| GSMUA_Achr11P... | Banana | plastid | 9.64 | 17.26 |
| GSMUA_Achr1P05710_001 | Banana | cytosol | 13.82 | 15.61 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr2P07240_001 | EnsemblPlants:GSMUA_Achr2T07240_001 | EnsemblPlantsGene:GSMUA_Achr2G07240_001 | Gene3D:3.10.20.90 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | InterPro:IPR000270 | InterPro:PB1_dom | PANTHER:PTHR31066 | PANTHER:PTHR31066:SF27 | PFAM:PF00564 |
| PFscan:PS51745 | SEG:seg | SMART:SM00666 | SUPFAM:SSF54277 | UniParc:UPI0002958141 | UniProt:M0S5W5 |
| MapMan:35.2 | : | : | : | : | : |
Description
Putative PB1 domain containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr2G07240_001]
Coordinates
chr2:+:11783288..11785399
Molecular Weight (calculated)
59022.6 Da
IEP (calculated)
6.119
GRAVY (calculated)
-0.433
Length
550 amino acids
Sequence
(BLAST)
(BLAST)
001: MCSYGGRIVP RPTDKSLCYL GGETRIVVVD RHSSLADLST MLSRNLHGGR AFSLKYQLPN EDLDSLISVA TDEDLDNMVE EYDRILASSA SGTGGSTRSS
101: RLRLFLFPSK TETSPTSSIG SLLDDSKSET WFVDALNSAM NGMGINGLAH GLSSDSASVN CLLGLEDDAS VYSLVLSLLD SSGKHARHGQ DVQSVPDSPM
201: LDTASSFGSA SSAPSLSNLP PILVRPDDRP PDLGISGLEG HFAQMNLSAA AAAAGGQRLD NEFKESSYSP QLQLQPPPPI SLLASSASTS TISPTENPSR
301: AFSSDDEKSD HGSIQKPLPP PQSSKPNKVE SPISDSGSRT TYSNATLDPK RELAAVSSIP NHHVVTSATD AVGYQLASTQ LEQFQQQQFY PQLHHHQQQQ
401: QQHQYIPANS HYIHHPATGV VIPVPSYFPI AAHTIQQSPQ VHPYDPHLPL YYYPVHQTPP INLADANSIP SGAKPPMPVP QVLPKADQIP TYAGMGYHVV
501: QHHQIAHSPA SMSNYGYQFA ADHSQPQMYY SQATPPPALA PADAKATRAS
101: RLRLFLFPSK TETSPTSSIG SLLDDSKSET WFVDALNSAM NGMGINGLAH GLSSDSASVN CLLGLEDDAS VYSLVLSLLD SSGKHARHGQ DVQSVPDSPM
201: LDTASSFGSA SSAPSLSNLP PILVRPDDRP PDLGISGLEG HFAQMNLSAA AAAAGGQRLD NEFKESSYSP QLQLQPPPPI SLLASSASTS TISPTENPSR
301: AFSSDDEKSD HGSIQKPLPP PQSSKPNKVE SPISDSGSRT TYSNATLDPK RELAAVSSIP NHHVVTSATD AVGYQLASTQ LEQFQQQQFY PQLHHHQQQQ
401: QQHQYIPANS HYIHHPATGV VIPVPSYFPI AAHTIQQSPQ VHPYDPHLPL YYYPVHQTPP INLADANSIP SGAKPPMPVP QVLPKADQIP TYAGMGYHVV
501: QHHQIAHSPA SMSNYGYQFA ADHSQPQMYY SQATPPPALA PADAKATRAS
001: MKSNQKKQKS PNYQNPRRQR GEIEREKEAK IMASIPPPEL DNDSLASSPR SEYDSQPRVR FMCTFGGRIL PRPPDNQLCY VGGDNRMVAV HRHTTFASLL
101: SKLAKLSGKS NISVKYQLPN EDLDALISVS TDEDVENMMD EYDRVAQNQN PRASRLRLFL FTKNVAGEED NDSRASSISS LLDSSVNREQ WFLDALNLGS
201: SAAATAVSNG GSGRVFERVR SEVSSIVSEV PDYLFGLDNF DETAPPHELR DRDPRAKIQR EVSTLSDPGS PRRDVPSPYG STSSAPVMRI STPELPPPVF
301: IKPESPEPVS TPKSNPQPEQ VMQQSNLPVN SQWQYAPGPG QQVHYQGHTI HQSPVYYVPG SVPGNHMVQQ GNHMVQPGNH MVQPVQMPGQ YLQQYHHVPM
401: GYHQPQTHQM AGPGQVYGGT VRPVMMAVDG MNRTGYYGMK TPGPVQMYQH HTGMVVPGVE EQQQYRTETD SDTGRAS
101: SKLAKLSGKS NISVKYQLPN EDLDALISVS TDEDVENMMD EYDRVAQNQN PRASRLRLFL FTKNVAGEED NDSRASSISS LLDSSVNREQ WFLDALNLGS
201: SAAATAVSNG GSGRVFERVR SEVSSIVSEV PDYLFGLDNF DETAPPHELR DRDPRAKIQR EVSTLSDPGS PRRDVPSPYG STSSAPVMRI STPELPPPVF
301: IKPESPEPVS TPKSNPQPEQ VMQQSNLPVN SQWQYAPGPG QQVHYQGHTI HQSPVYYVPG SVPGNHMVQQ GNHMVQPGNH MVQPVQMPGQ YLQQYHHVPM
401: GYHQPQTHQM AGPGQVYGGT VRPVMMAVDG MNRTGYYGMK TPGPVQMYQH HTGMVVPGVE EQQQYRTETD SDTGRAS
Arabidopsis Description
AT4g05150/C17L7_70 [Source:UniProtKB/TrEMBL;Acc:Q940N7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.