Factsheet for HORVU3Hr1G008420.4

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus
Any Predictor:	cytosol
MultiLoc:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU3Hr1G073190.1
HORVU6Hr1G093960.1
HORVU7Hr1G011400.2

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G01190.1	HORVU3Hr1G073190.1	AT3G16120.1	21798944
AT2G01190.1	HORVU7Hr1G011400.2	AT3G16120.1	21798944
AT2G01190.1	HORVU6Hr1G093960.1	AT5G08330.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU3Hr1G008310.1	Barley	cytosol	16.67	98.6
TraesCS3A01G051800.1	Wheat	nucleus	80.73	97.02
TraesCS3B01G060500.1	Wheat	cytosol	74.82	95.62
TraesCS3D01G050900.1	Wheat	nucleus	73.05	93.21
Zm00001d003965_P001	Maize	mitochondrion	10.64	81.82
Os01t0139200-01	Rice	nucleus	62.17	78.39
EES00348	Sorghum	nucleus	60.28	76.92
Zm00001d039916_P010	Maize	nucleus	59.34	76.18
Zm00001d008591_P001	Maize	mitochondrion	59.46	75.64
GSMUA_AchrUn_...	Banana	nucleus	27.78	60.88
GSMUA_Achr10P...	Banana	nucleus	21.16	52.96
GSMUA_Achr2P07240_001	Banana	nucleus	32.98	50.73
GSMUA_Achr8P18320_001	Banana	nucleus	30.97	50.58
GSMUA_Achr11P...	Banana	plasma membrane, vacuole	41.13	49.71
GSMUA_Achr1P21240_001	Banana	nucleus	34.63	48.83
GSMUA_Achr6P09850_001	Banana	endoplasmic reticulum, extracellular	37.94	45.66
VIT_01s0011g04140.t01	Wine grape	nucleus	30.02	36.44
Bra010988.1-P	Field mustard	cytosol, nucleus, plasma membrane	10.99	35.77
CDY36115	Canola	cytosol, nucleus, vacuole	10.87	35.52
VIT_17s0000g03180.t01	Wine grape	nucleus	26.36	34.95
CDY24410	Canola	cytosol	10.52	34.5
KRH35888	Soybean	nucleus	28.61	34.23
KRG90906	Soybean	nucleus, plastid	28.96	33.98
Solyc05g008830.2.1	Tomato	nucleus	25.53	33.59
HORVU2Hr1G041600.1	Barley	mitochondrion	11.94	33.44
PGSC0003DMT400015310	Potato	nucleus	26.0	33.38
KRH38173	Soybean	nucleus	25.06	32.52
CDY25942	Canola	nucleus, plastid	23.76	32.01
KRH39133	Soybean	cytosol	25.3	31.99
KRH48572	Soybean	cytosol	24.23	31.98
Solyc04g007460.2.1	Tomato	plastid	25.77	31.96
Bra017462.1-P	Field mustard	cytosol, plastid	24.0	31.62
AT1G25300.1	Thale cress	cytosol, nucleus, plasma membrane	10.17	31.62
CDY41073	Canola	nucleus, plastid	23.52	31.54
CDY68695	Canola	nucleus	20.45	31.45
Solyc03g118870.2.1	Tomato	nucleus	23.64	31.4
AT2G01190.1	Thale cress	nucleus, plastid	26.71	31.39
PGSC0003DMT400014442	Potato	nucleus	25.3	31.24
Bra024899.1-P	Field mustard	nucleus, plastid	26.71	31.13
VIT_14s0006g02490.t01	Wine grape	nucleus	18.79	30.64
CDY17690	Canola	nucleus, plastid	26.0	30.39
PGSC0003DMT400067817	Potato	cytosol	19.5	29.62
Solyc02g086360.2.1	Tomato	cytosol	19.5	29.62
Bra006344.1-P	Field mustard	plastid	12.41	29.58
Bra022297.1-P	Field mustard	nucleus	19.62	28.97
Bra037596.1-P	Field mustard	nucleus	21.99	28.93
CDY66514	Canola	nucleus	21.99	28.88
AT3G18230.1	Thale cress	nucleus, plastid	22.7	28.83
CDY40994	Canola	cytosol	19.39	28.77
CDY24442	Canola	cytosol	19.39	28.72
CDX92217	Canola	cytosol	19.62	28.33
Bra022296.1-P	Field mustard	cytosol	19.74	28.21
AT5G16220.1	Thale cress	plastid	15.13	26.89
CDX70680	Canola	plastid	14.3	26.25
CDX78676	Canola	plastid	13.83	26.06
Bra008633.1-P	Field mustard	plastid	14.42	25.15
CDX69461	Canola	plastid	14.42	25.15
HORVU4Hr1G026270.1	Barley	cytosol	8.75	22.42
HORVU6Hr1G055230.3	Barley	cytosol	5.91	21.46
HORVU3Hr1G075060.1	Barley	cytosol, peroxisome	6.86	19.53
HORVU1Hr1G065470.6	Barley	mitochondrion	9.22	17.97
HORVU6Hr1G089280.5	Barley	cytosol, mitochondrion, nucleus	11.47	17.6
HORVU3Hr1G064760.1	Barley	cytosol	3.78	16.49

Protein Annotations

EnsemblPlants:HORVU3Hr1G008420.4	EnsemblPlantsGene:HORVU3Hr1G008420	Gene3D:3.10.20.90	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR000270	InterPro:PB1_dom	ncoils:Coil	PANTHER:PTHR31066	PANTHER:PTHR31066:SF27	PFAM:PF00564
SEG:seg	SMART:SM00666	SUPFAM:SSF54277	UniParc:UPI000B4621BA	UniProt:A0A287K236	MapMan:35.2

Description

No Description!

Coordinates

chrchr3H:-:19022917..19025999

Molecular Weight (calculated)

91033.1 Da

IEP (calculated)

7.082

GRAVY (calculated)

-0.748

Length

846 amino acids

Sequence
(BLAST)

001: GSPNGSFIFS RLAAAVKKMA WRDTKREEKR ASNKWDGAAV CRDALRLAVH TQTQAGQITQ LPIKTSDISR RRSPLPHPHP LPFFLPPSLP PSLSLRYIIP
101: LPIQPPKSNQ NPHPNPAEIR PPREIGRSIH PSPTRMDSAP PSAAGGGGGY PESTDSSPRS RGGDSWDEPF PSSAAAAAAA AGGGGRLRLM CSFGGRIVPR
201: PTDKSLCYLG GETRIVAVDR NASLADVHGR LSRSLLAGQP FTLKYQLPNE DLDSLISVST DEDLDNLVDE YDRVAASSSS SGASSRTSRI RLFLFPAKPE
301: SSSSLGSLLD DSSKSENWFV DALNSAISGS FDGIPRGIST DSASVNCLLG LEDDNASQHS RSGVQNSGPA EDQRASQQKL AAAAAAAARH QHDVQSVPDS
401: PMLDKNSSFG STSSAPSLSN LPPIRVRPED RQPLAPPVSV EDHFAQMGIS DQQGLPPPVM GYMQPPPQSQ IPAMAMQAAS SISPSEPPSR AFSDDDRSDH
501: GGRMQQPPKQ EVPPTVDPNN RAMFYNDMSP RNEMKRDMPV GTDASSYRAP APAPDAAASA AAAQPPPGYV YAQMQPQQQL QQPPQQQLQQ QQQQQQHQQQ
601: QLQQQAQQQL PQQIQQQPQQ QLPPQLQQQA QQQPPQPQQA HQPAPQQYVT AGNQHFIHNP ATGTFIPIQS YYQQPVPQQA PQQQQSPAFD PNTGMYYIPM
701: QRPNAPQQYT IPAGAVAPMA APTIVDSAPK PTVPIPQQYM KPELQQPGMY RTAAPAAPAP GPNTAPNYAG MGYHHVMQSH HHPASQPPPT MAGNYGYPEY
801: AADPRAQVFY SQAGAPPASL PPQYQQPMGA PDASGQADMN QNRGGS

Best Arabidopsis Sequence Match ( AT2G01190.1 )
(BLAST)

001: MEPPPSSLSS TAVASTSISA ATAPVPPPLP PHVTSSYPES LDSSPRSRTT DGWDDLPAPS GGGGGGGGSA VSSKLRFMCS YGGHILPRPH DKSLCYMGGD
101: TRIVVVDRNS SLPSLIARLS NTLLDGRSFT LKYQLPSEDL DSLISVTTDE DLDNMIEEYD RTISASNSTK PSRLRLFLFT SKPEATQSMG QILESSAKSD
201: DWFLNALNSA GLLNRGFSDS DTNVNRLLGL DDALALRSNS GDNNNRDGDD GSVKSAKQQQ PPPPQQQEQQ QGGQDVNCLP DSPMLDTSSS FGSTSSSPSL
301: ANLPPIRVHV EEPGGVRTLP DQRNLGIEEQ FARFNVGNKH QLHDDGFAAI SSPPPMPVTI ALPAAPVTAA TVSNEFQARV YSDDERSDHG VQAGYRKPPT
401: PRSQPQNLPP QQAHQLKSNS GGGHELPSPN SVSSDSSMSN PMFHQRPSVY QEPIAQIPSG STVVTGMINP SDPSTLLSQH QNQDPAYILH PQFEQQSAQS
501: QPQQQFIHTA APPQYIHHHP SSGLPVPTYI QVYPSQQPQQ SFHQHAGRLD QQPYPVYYVT APVPPRPYSM PVPQSPSVSD AAGSIPSNHP NSTMMPPPPN
601: NHMRSVSSGK PEMGQAGVYT TAPGVGGAQM VHQIPTNQQQ FMGYSQIRHP PQSGSAGNPN YGYEYVDNAH TQIYYTQPMG HAQYQTMTGP PPAMVMPDGS
701: AAAKLPAENM TQQIRSSQPL

Arabidopsis Description

Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q9ZU48]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.