Factsheet for Solyc05g008830.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 2
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g008230.2.1
Solyc03g120690.2.1
Solyc04g009180.1.1
Solyc06g071750.2.1
Solyc12g044240.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G01190.1	Solyc03g120690.2.1	AT3G16120.1	21798944
AT2G01190.1	Solyc12g044240.1.1	AT3G16120.1	21798944
AT2G01190.1	Solyc06g071750.2.1	AT3G48240.1	21798944
AT2G01190.1	Solyc01g008230.2.1	AT5G08330.1	21798944
AT2G01190.1	Solyc04g009180.1.1	AT5G08330.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g007460.2.1	Tomato	plastid	63.61	59.97
Zm00001d003965_P001	Maize	mitochondrion	9.8	57.27
VIT_01s0011g04140.t01	Wine grape	nucleus	55.05	50.79
HORVU3Hr1G008310.1	Barley	cytosol	10.58	47.55
KRH35888	Soybean	nucleus	52.26	47.52
KRG90906	Soybean	nucleus, plastid	52.26	46.6
KRH38173	Soybean	nucleus	43.86	43.25
GSMUA_AchrUn_...	Banana	nucleus	24.73	41.19
CDY41073	Canola	nucleus, plastid	39.97	40.73
Bra017462.1-P	Field mustard	cytosol, plastid	40.59	40.65
Bra024899.1-P	Field mustard	nucleus, plastid	45.41	40.22
CDY17690	Canola	nucleus, plastid	45.1	40.06
AT2G01190.1	Thale cress	nucleus, plastid	44.01	39.31
CDY25942	Canola	nucleus, plastid	38.26	39.17
GSMUA_Achr10P...	Banana	nucleus	19.13	36.39
Solyc03g118870.2.1	Tomato	nucleus	35.61	35.95
GSMUA_Achr8P18320_001	Banana	nucleus	27.84	34.56
GSMUA_Achr2P07240_001	Banana	nucleus	28.46	33.27
Solyc02g086360.2.1	Tomato	cytosol	28.77	33.21
EES00348	Sorghum	nucleus	34.06	33.03
Zm00001d039916_P010	Maize	nucleus	33.75	32.93
GSMUA_Achr1P21240_001	Banana	nucleus	30.33	32.5
Zm00001d008591_P001	Maize	mitochondrion	33.44	32.33
Os01t0139200-01	Rice	nucleus	33.44	32.04
Solyc02g079360.1.1	Tomato	nucleus	19.13	31.95
GSMUA_Achr11P...	Banana	plasma membrane, vacuole	33.9	31.14
TraesCS3A01G051800.1	Wheat	nucleus	33.75	30.82
GSMUA_Achr6P09850_001	Banana	endoplasmic reticulum, extracellular	33.28	30.44
TraesCS3D01G050900.1	Wheat	nucleus	31.1	30.17
Solyc06g071750.2.1	Tomato	plastid	9.02	30.05
Solyc04g076820.1.1	Tomato	plastid	21.31	28.9
Solyc02g091670.1.1	Tomato	cytosol	11.98	28.52
TraesCS3B01G060500.1	Wheat	cytosol	29.24	28.4
Solyc05g013530.2.1	Tomato	plastid	9.49	27.85
Solyc01g106320.2.1	Tomato	extracellular	19.91	25.96
HORVU3Hr1G008420.4	Barley	cytosol, nucleus	33.59	25.53

Protein Annotations

EnsemblPlants:Solyc05g008830.2.1	EnsemblPlantsGene:Solyc05g008830.2	Gene3D:3.10.20.90	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR000270	InterPro:PB1_dom	PANTHER:PTHR31066	PANTHER:PTHR31066:SF3	PFAM:PF00564	PFscan:PS51745
SEG:seg	SMART:SM00666	SUPFAM:SSF54277	UniParc:UPI000276669A	UniProt:K4BX57	MapMan:35.2

Description

No Description!

Coordinates

chr5:+:3057292..3060357

Molecular Weight (calculated)

69687.1 Da

IEP (calculated)

5.635

GRAVY (calculated)

-0.580

Length

643 amino acids

Sequence
(BLAST)

001: MDPPPFSGGP ITAATAAVPP SGTINYADSA DSSPGSRHTD SWDEQQQPSN TAATTTGGKL RLMCSYGGHI FPRPHDKTLC YVGGDTRIFV ADRNSSLAEL
101: SARLSKTLLG GKPFCLKYQL QNEDLDSLIS VTSDEDLENM IDEYDRMSSS SKITRLRLFL FPSKIDSWNP SIGMIRDSSV RSEDWFVNIL NGANSTASTK
201: VFSESSSVNC LLGLDDDLGN ANIKEVEAQL EVKNGGNSVK GTIHDVQSVP DSPMVETTSS FGSGSSMPSL ANLPPIRVHV EESQKGGGIE EQFAQMTVGV
301: KQKNEEGGFL GLASPPAPAV VVTATVVSGV PVVEQMMQQQ QQQVQQPQQL MSKPVIPSDL PSPDSVSSEG SGRQRHYFYQ DPGVHFQSGS GRITGNSADL
401: NMSDSMGRVQ VKQQVQDGGG GYALPVQYEQ HPQMLQPQQY VHAGQYIQHT PSGHVPMTSY YPMYPSQHQT HMQHPNLEHQ YPVYFIPARP GQGYSLPLQQ
501: TNYTEPAQTV PPTRPQTPPT MANPASAYNP ARNPPSSNPE MVAGTYRTSA SAAPQLVQIT PGQHQPQYVN YSQIHHPSQS IPPTSATTAN YAYDFADPHA
601: KMYYSQPLAP QLSAQYQTMT SAPAVSFAET SSQLSAENSK QQN

Best Arabidopsis Sequence Match ( AT2G01190.1 )
(BLAST)

001: MEPPPSSLSS TAVASTSISA ATAPVPPPLP PHVTSSYPES LDSSPRSRTT DGWDDLPAPS GGGGGGGGSA VSSKLRFMCS YGGHILPRPH DKSLCYMGGD
101: TRIVVVDRNS SLPSLIARLS NTLLDGRSFT LKYQLPSEDL DSLISVTTDE DLDNMIEEYD RTISASNSTK PSRLRLFLFT SKPEATQSMG QILESSAKSD
201: DWFLNALNSA GLLNRGFSDS DTNVNRLLGL DDALALRSNS GDNNNRDGDD GSVKSAKQQQ PPPPQQQEQQ QGGQDVNCLP DSPMLDTSSS FGSTSSSPSL
301: ANLPPIRVHV EEPGGVRTLP DQRNLGIEEQ FARFNVGNKH QLHDDGFAAI SSPPPMPVTI ALPAAPVTAA TVSNEFQARV YSDDERSDHG VQAGYRKPPT
401: PRSQPQNLPP QQAHQLKSNS GGGHELPSPN SVSSDSSMSN PMFHQRPSVY QEPIAQIPSG STVVTGMINP SDPSTLLSQH QNQDPAYILH PQFEQQSAQS
501: QPQQQFIHTA APPQYIHHHP SSGLPVPTYI QVYPSQQPQQ SFHQHAGRLD QQPYPVYYVT APVPPRPYSM PVPQSPSVSD AAGSIPSNHP NSTMMPPPPN
601: NHMRSVSSGK PEMGQAGVYT TAPGVGGAQM VHQIPTNQQQ FMGYSQIRHP PQSGSAGNPN YGYEYVDNAH TQIYYTQPMG HAQYQTMTGP PPAMVMPDGS
701: AAAKLPAENM TQQIRSSQPL

Arabidopsis Description

Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q9ZU48]
SUBAcon: [nucleus,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.