Factsheet for GSMUA_Achr8P18320_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr2P19900_001
GSMUA_Achr7P14400_001
GSMUA_Achr7P25190_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G01190.1	GSMUA_Achr10P...	AT3G16120.1	21798944
AT2G01190.1	GSMUA_Achr10P...	AT3G16120.1	21798944
AT2G01190.1	GSMUA_Achr2P19900_001	AT3G16120.1	21798944
AT2G01190.1	GSMUA_Achr7P14400_001	AT3G16120.1	21798944
AT2G01190.1	GSMUA_Achr7P25190_001	AT3G16120.1	21798944
AT2G01190.1	GSMUA_Achr11P...	AT5G08330.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d003965_P001	Maize	mitochondrion	15.06	70.91
GSMUA_Achr10P...	Banana	nucleus	45.37	69.53
HORVU3Hr1G008310.1	Barley	cytosol	18.53	67.13
GSMUA_AchrUn_...	Banana	nucleus	47.49	63.73
GSMUA_Achr2P07240_001	Banana	nucleus	59.85	56.36
GSMUA_Achr6P09850_001	Banana	endoplasmic reticulum, extracellular	74.71	55.05
GSMUA_Achr1P21240_001	Banana	nucleus	62.36	53.83
GSMUA_Achr11P...	Banana	plasma membrane, vacuole	61.78	45.71
EES00348	Sorghum	nucleus	53.09	41.48
Os01t0139200-01	Rice	nucleus	53.67	41.43
Zm00001d039916_P010	Maize	nucleus	52.32	41.12
Zm00001d008591_P001	Maize	mitochondrion	51.93	40.45
TraesCS3B01G060500.1	Wheat	cytosol	51.35	40.18
TraesCS3A01G051800.1	Wheat	nucleus	51.16	37.64
TraesCS3D01G050900.1	Wheat	nucleus	47.3	36.95
GSMUA_Achr4P33650_001	Banana	mitochondrion	20.85	34.84
Bra010988.1-P	Field mustard	cytosol, nucleus, plasma membrane	17.18	34.23
CDY36115	Canola	cytosol, nucleus, vacuole	16.99	33.98
CDY24410	Canola	cytosol	16.8	33.72
AT1G25300.1	Thale cress	cytosol, nucleus, plasma membrane	16.99	32.35
VIT_01s0011g04140.t01	Wine grape	nucleus	42.66	31.71
VIT_17s0000g03180.t01	Wine grape	nucleus	38.22	31.03
HORVU3Hr1G008420.4	Barley	cytosol, nucleus	50.58	30.97
KRH48572	Soybean	cytosol	37.84	30.58
KRH39133	Soybean	cytosol	39.0	30.19
Solyc03g118870.2.1	Tomato	nucleus	36.87	29.98
KRH35888	Soybean	nucleus	40.73	29.84
GSMUA_Achr3P19440_001	Banana	plastid	9.27	29.81
PGSC0003DMT400014442	Potato	nucleus	39.38	29.78
KRG90906	Soybean	nucleus, plastid	40.93	29.4
CDY25942	Canola	nucleus, plastid	35.52	29.3
Bra024899.1-P	Field mustard	nucleus, plastid	40.73	29.06
PGSC0003DMT400015310	Potato	nucleus	36.87	28.98
CDY17690	Canola	nucleus, plastid	40.35	28.87
KRH38173	Soybean	nucleus	36.29	28.83
CDY41073	Canola	nucleus, plastid	34.94	28.68
Bra017462.1-P	Field mustard	cytosol, plastid	35.52	28.66
VIT_14s0006g02490.t01	Wine grape	nucleus	28.57	28.52
Solyc04g007460.2.1	Tomato	plastid	37.45	28.45
AT2G01190.1	Thale cress	nucleus, plastid	39.38	28.33
Bra022297.1-P	Field mustard	nucleus	30.89	27.92
Solyc05g008830.2.1	Tomato	nucleus	34.56	27.84
CDY68695	Canola	nucleus	29.34	27.64
Solyc02g086360.2.1	Tomato	cytosol	29.34	27.29
CDX92217	Canola	cytosol	30.7	27.13
Bra022296.1-P	Field mustard	cytosol	30.89	27.03
CDY40994	Canola	cytosol	29.73	27.02
CDY24442	Canola	cytosol	29.73	26.97
PGSC0003DMT400067817	Potato	cytosol	28.96	26.93
AT3G18230.1	Thale cress	nucleus, plastid	34.56	26.88
Bra037596.1-P	Field mustard	nucleus	32.63	26.28
CDY66514	Canola	nucleus	32.63	26.24
GSMUA_Achr10P...	Banana	cytosol	10.23	25.73
GSMUA_Achr11P...	Banana	cytosol, nucleus, plastid	10.04	23.85
GSMUA_Achr8P16400_001	Banana	plastid	9.27	23.76
Bra006344.1-P	Field mustard	plastid	15.83	23.1
AT5G16220.1	Thale cress	plastid	21.04	22.9
CDX70680	Canola	plastid	19.69	22.13
CDX69461	Canola	plastid	20.46	21.86
Bra008633.1-P	Field mustard	plastid	20.46	21.86
CDX78676	Canola	plastid	18.73	21.6
GSMUA_Achr6P06660_001	Banana	plastid	9.27	19.83
GSMUA_Achr11P...	Banana	plastid	10.04	16.94
GSMUA_Achr3P21900_001	Banana	nucleus	11.97	16.85
GSMUA_Achr1P20460_001	Banana	cytosol, plastid	13.32	16.67
GSMUA_Achr1P05710_001	Banana	cytosol	14.09	14.99

Protein Annotations

EnsemblPlants:GSMUA_Achr8P18320_001	EnsemblPlants:GSMUA_Achr8T18320_001	EnsemblPlantsGene:GSMUA_Achr8G18320_001	Gene3D:3.10.20.90	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR000270	InterPro:PB1_dom	PANTHER:PTHR31066	PANTHER:PTHR31066:SF27	PFAM:PF00564
SEG:seg	SMART:SM00666	SUPFAM:SSF54277	UniParc:UPI00029671E4	UniProt:M0TRI5	MapMan:35.2

Description

Putative PB1 domain containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr8G18320_001]

Coordinates

chr8:-:22191980..22195464

Molecular Weight (calculated)

55410.2 Da

IEP (calculated)

6.062

GRAVY (calculated)

-0.556

Length

518 amino acids

Sequence
(BLAST)

001: MCSYGGRIVP RPTDKSLCYL GGETRMVVVD RHSSLADISA KLSRKLLGGR PFSLKYQLPN EDLDSLISVT TDEDLENMID ELDRISAAAS GGGGSTRSSR
101: LRLFLFPSKS ESAPSSTIGS LLDESKSETW FVDALNSAIG GMSLDGLPRG HSADSATVDS LLGLEDNSSV HSRKGGGGGG AASHPEPEQL VLPRPDSAGK
201: LARHGQDVHS VPDSPMLDTT SSFGSTSSAP SLSNLPPIPV PTDDRYADHR ISGLDDHLAH MNLSSDSATS QRPDDGFKEP IYAHHLQVPP PIPIPTASDS
301: IPTISASDNS NRVFSDDEKS DHGVRKPPQP PKPTQVDAPS SDPASSYRAP LPPVDAPGFV LSSVHPEQLQ QQQTHSQFHQ QQPQFISTNP HYIHHTGAGT
401: GVPMASYYSI MPQSMQQLPQ AHPFDPHIPM YYVPVRQTTP YPYAGTGYHV MQHPHLSQSP ATMANYGYEV TAAPGHPQMY YSQASSQPAL SRQYQMASST
501: AVIPEAGAPG DSNASKTS

Best Arabidopsis Sequence Match ( AT2G01190.1 )
(BLAST)

001: MEPPPSSLSS TAVASTSISA ATAPVPPPLP PHVTSSYPES LDSSPRSRTT DGWDDLPAPS GGGGGGGGSA VSSKLRFMCS YGGHILPRPH DKSLCYMGGD
101: TRIVVVDRNS SLPSLIARLS NTLLDGRSFT LKYQLPSEDL DSLISVTTDE DLDNMIEEYD RTISASNSTK PSRLRLFLFT SKPEATQSMG QILESSAKSD
201: DWFLNALNSA GLLNRGFSDS DTNVNRLLGL DDALALRSNS GDNNNRDGDD GSVKSAKQQQ PPPPQQQEQQ QGGQDVNCLP DSPMLDTSSS FGSTSSSPSL
301: ANLPPIRVHV EEPGGVRTLP DQRNLGIEEQ FARFNVGNKH QLHDDGFAAI SSPPPMPVTI ALPAAPVTAA TVSNEFQARV YSDDERSDHG VQAGYRKPPT
401: PRSQPQNLPP QQAHQLKSNS GGGHELPSPN SVSSDSSMSN PMFHQRPSVY QEPIAQIPSG STVVTGMINP SDPSTLLSQH QNQDPAYILH PQFEQQSAQS
501: QPQQQFIHTA APPQYIHHHP SSGLPVPTYI QVYPSQQPQQ SFHQHAGRLD QQPYPVYYVT APVPPRPYSM PVPQSPSVSD AAGSIPSNHP NSTMMPPPPN
601: NHMRSVSSGK PEMGQAGVYT TAPGVGGAQM VHQIPTNQQQ FMGYSQIRHP PQSGSAGNPN YGYEYVDNAH TQIYYTQPMG HAQYQTMTGP PPAMVMPDGS
701: AAAKLPAENM TQQIRSSQPL

Arabidopsis Description

Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q9ZU48]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.