Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr2P19900_001 | Banana | cytosol | 87.1 | 87.1 |
| GSMUA_Achr10P... | Banana | cytosol | 86.02 | 86.02 |
| Solyc12g044240.1.1 | Tomato | cytosol | 78.49 | 77.66 |
| PGSC0003DMT400019607 | Potato | cytosol | 77.42 | 76.6 |
| Bra014318.1-P | Field mustard | cytosol | 76.34 | 75.53 |
| CDY02551 | Canola | cytosol | 76.34 | 75.53 |
| AT1G52245.1 | Thale cress | cytosol | 76.34 | 75.53 |
| GSMUA_Achr7P25190_001 | Banana | cytosol | 75.27 | 75.27 |
| VIT_09s0002g04280.t01 | Wine grape | cytosol | 75.27 | 73.68 |
| Bra018957.1-P | Field mustard | cytosol | 74.19 | 73.4 |
| Solyc03g120690.2.1 | Tomato | cytosol | 73.12 | 72.34 |
| Bra027190.1-P | Field mustard | cytosol | 72.04 | 72.04 |
| CDX97722 | Canola | cytosol | 72.04 | 72.04 |
| PGSC0003DMT400006527 | Potato | cytosol | 72.04 | 71.28 |
| AT3G16120.1 | Thale cress | cytosol | 70.97 | 70.97 |
| KRH60274 | Soybean | cytosol | 70.97 | 70.97 |
| CDY30135 | Canola | cytosol | 70.97 | 70.97 |
| KRH09878 | Soybean | cytosol | 72.04 | 70.53 |
| KRH41561 | Soybean | cytosol | 69.89 | 69.89 |
| GSMUA_Achr10P... | Banana | cytosol | 76.34 | 69.61 |
| KRH23441 | Soybean | cytosol | 70.97 | 69.47 |
| VIT_11s0016g03770.t01 | Wine grape | cytosol | 68.82 | 66.67 |
| CDY47528 | Canola | cytosol | 69.89 | 50.0 |
| GSMUA_Achr2P14130_001 | Banana | cytosol | 52.69 | 44.95 |
| GSMUA_Achr8P30040_001 | Banana | cytosol | 33.33 | 40.26 |
| GSMUA_Achr11P... | Banana | cytosol | 33.33 | 40.26 |
| GSMUA_Achr9P29930_001 | Banana | cytosol | 47.31 | 39.29 |
| GSMUA_AchrUn_... | Banana | cytosol | 29.03 | 30.34 |
| GSMUA_Achr1P20660_001 | Banana | cytosol | 40.86 | 27.94 |
| GSMUA_Achr3P22950_001 | Banana | cytosol, mitochondrion | 39.78 | 26.24 |
| GSMUA_Achr7P12500_001 | Banana | cytosol | 36.56 | 23.45 |
| GSMUA_Achr9P27210_001 | Banana | nucleus | 34.41 | 21.05 |
Protein Annotations
| Gene3D:3.30.740.10 | MapMan:35.2 | InterPro:DLC_sf | InterPro:Dynein_light_chain_typ-1/2 | GO:GO:0003674 | GO:GO:0003774 |
| GO:GO:0003824 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005856 |
| GO:GO:0005874 | GO:GO:0007017 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016787 | GO:GO:0030286 |
| EnsemblPlantsGene:GSMUA_Achr7G14400_001 | EnsemblPlants:GSMUA_Achr7P14400_001 | EnsemblPlants:GSMUA_Achr7T14400_001 | InterPro:IPR037177 | UniProt:M0THH7 | PFAM:PF01221 |
| PANTHER:PTHR11886 | PANTHER:PTHR11886:SF47 | SMART:SM01375 | SUPFAM:SSF54648 | UniParc:UPI0002964D78 | : |
Description
Putative Dynein light chain LC6, flagellar outer arm [Source:GMGC_GENE;Acc:GSMUA_Achr7G14400_001]
Coordinates
chr7:+:11535327..11535737
Molecular Weight (calculated)
10515.9 Da
IEP (calculated)
5.585
GRAVY (calculated)
0.296
Length
93 amino acids
Sequence
(BLAST)
(BLAST)
1: MLEGKAMIQD TDMPVKMQLQ AMSSASQALD LFDVLDCNNL ACYIKKEFDL RYGFGWQCVV GSNFGCCFTH TKGTFIYFCL ETLHFLIFKC SAA
1: MLEGKAMVED SDMPVKMQMQ AMAFASQALD LFDVFDCKSI AGHIKKEFDE RYGSGWQCVV GSNFGCFFTH SKGTFIYFQL ETLKFLIFKG ASTP
Arabidopsis Description
At1g52250 [Source:UniProtKB/TrEMBL;Acc:Q9M810]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.