Factsheet for GSMUA_AchrUn_randomP25950_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr3P18890_001
GSMUA_Achr4P03430_001
GSMUA_Achr4P10960_001
GSMUA_Achr4P14130_001
GSMUA_Achr5P16030_001
GSMUA_Achr6P07710_001
GSMUA_Achr6P16600_001
GSMUA_Achr7P26200_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G15930.1	GSMUA_Achr10P...	AT3G01400.1	21798944
AT4G15930.1	GSMUA_Achr3P18890_001	AT3G01400.1	21798944
AT4G15930.1	GSMUA_Achr4P03430_001	AT3G01400.1	21798944
AT4G15930.1	GSMUA_Achr4P10960_001	AT3G01400.1	21798944
AT4G15930.1	GSMUA_Achr4P14130_001	AT3G01400.1	21798944
AT4G15930.1	GSMUA_Achr5P16030_001	AT3G01400.1	21798944
AT4G15930.1	GSMUA_Achr6P07710_001	AT3G01400.1	21798944
AT4G15930.1	GSMUA_Achr7P26200_001	AT3G01400.1	21798944
AT4G15930.1	GSMUA_Achr6P16600_001	AT5G14140.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P30040_001	Banana	cytosol	43.82	50.65
GSMUA_Achr11P...	Banana	cytosol	42.7	49.35
Bra012751.1-P	Field mustard	cytosol	34.83	40.26
VIT_05s0077g02110.t01	Wine grape	cytosol	47.19	35.9
Zm00001d008330_P001	Maize	mitochondrion	48.31	35.25
Os01t0256400-01	Rice	cytosol, nucleus	50.56	34.62
EES00507	Sorghum	cytosol	48.31	33.08
Zm00001d040291_P001	Maize	cytosol, mitochondrion	47.19	32.81
AT4G15930.1	Thale cress	cytosol	43.82	31.71
KRH37076	Soybean	cytosol	41.57	31.36
Solyc01g066590.2.1	Tomato	cytosol, extracellular	41.57	31.09
PGSC0003DMT400029467	Potato	extracellular	41.57	31.09
OQU83188	Sorghum	plastid	43.82	30.95
TraesCS3A01G175300.1	Wheat	cytosol	48.31	30.5
CDY57865	Canola	cytosol	41.57	30.33
GSMUA_Achr7P25190_001	Banana	cytosol	31.46	30.11
Bra038059.1-P	Field mustard	cytosol	41.57	29.84
CDY24919	Canola	cytosol	41.57	29.84
TraesCS3D01G180700.1	Wheat	cytosol	47.19	29.79
CDY09728	Canola	cytosol	40.45	29.75
CDX90554	Canola	cytosol	40.45	29.75
KRH12076	Soybean	cytosol	40.45	29.51
TraesCS3B01G205000.1	Wheat	cytosol	46.07	29.08
GSMUA_Achr7P14400_001	Banana	cytosol	30.34	29.03
GSMUA_Achr2P19900_001	Banana	cytosol	30.34	29.03
GSMUA_Achr10P...	Banana	cytosol	30.34	29.03
KRH12077	Soybean	cytosol	41.57	26.62
GSMUA_Achr10P...	Banana	cytosol	30.34	26.47
GSMUA_Achr2P14130_001	Banana	cytosol	30.34	24.77
Os06t0492700-00	Rice	endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole	38.2	24.64
KRH37077	Soybean	mitochondrion	40.45	22.93
GSMUA_Achr1P20660_001	Banana	cytosol	34.83	22.79
GSMUA_Achr9P29930_001	Banana	cytosol	28.09	22.32
GSMUA_Achr9P27210_001	Banana	nucleus	32.58	19.08
GSMUA_Achr3P22950_001	Banana	cytosol, mitochondrion	29.21	18.44
GSMUA_Achr7P12500_001	Banana	cytosol	29.21	17.93
KRH40946	Soybean	plastid	7.87	6.03

Protein Annotations

Gene3D:3.30.740.10	MapMan:35.2	InterPro:DLC_sf	InterPro:Dynein_light_chain_typ-1/2	GO:GO:0003674	GO:GO:0003774
GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005856
GO:GO:0005874	GO:GO:0007017	GO:GO:0008150	GO:GO:0009987	GO:GO:0016787	GO:GO:0030286
EnsemblPlantsGene:GSMUA_AchrUn_randomG25950_001	EnsemblPlants:GSMUA_AchrUn_randomP25950_001	EnsemblPlants:GSMUA_AchrUn_randomT25950_001	InterPro:IPR037177	UniProt:M0UCF3	PFAM:PF01221
PANTHER:PTHR11886	SMART:SM01375	SUPFAM:SSF54648	UniParc:UPI000296504F	:	:

Description

Putative uncharacterized protein [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG25950_001]

Coordinates

chrchrUn_random:-:127525808..127526222

Molecular Weight (calculated)

9768.5 Da

IEP (calculated)

5.600

GRAVY (calculated)

-0.387

Length

89 amino acids

Sequence
(BLAST)

1: MGDESNSGAA TAQQKELDVI LKGVDMSDEM RSHACACARA AFQEHTVEKN IAEYIKKEFD AKYGQSWHCI VGRNFGTRID LVLPSSSCA

Best Arabidopsis Sequence Match ( AT4G15930.1 )
(BLAST)

001: MSDGRRKKSV NGGAPAQTIL DDRRSSLPEV EASPPAGKRA VIKSADMKDD MQKEAIEIAI SAFEKYSVEK DIAENIKKEF DKKHGATWHC IVGRNFGSYV
101: THETNHFVYF YLDQKAVLLF KSG

Arabidopsis Description

At4g15930 [Source:UniProtKB/TrEMBL;Acc:Q84VW0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.