CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 4
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER97464
OQU83468

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G15930.1	EER97464	AT3G01400.1	21798944
AT4G15930.1	OQU83468	AT5G14140.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d008330_P001	Maize	mitochondrion	88.46	94.26
Zm00001d040291_P001	Maize	cytosol, mitochondrion	92.31	93.75
Os01t0256400-01	Rice	cytosol, nucleus	85.38	85.38
Bra012751.1-P	Field mustard	cytosol	48.46	81.82
GSMUA_Achr11P...	Banana	cytosol	46.92	79.22
GSMUA_Achr8P30040_001	Banana	cytosol	46.15	77.92
TraesCS3D01G180700.1	Wheat	cytosol	79.23	73.05
TraesCS3B01G205000.1	Wheat	cytosol	79.23	73.05
TraesCS3A01G175300.1	Wheat	cytosol	79.23	73.05
VIT_05s0077g02110.t01	Wine grape	cytosol	60.0	66.67
OQU83188	Sorghum	plastid	63.85	65.87
KRH37076	Soybean	cytosol	59.23	65.25
CDY09728	Canola	cytosol	60.0	64.46
KRH12076	Soybean	cytosol	60.0	63.93
CDX90554	Canola	cytosol	59.23	63.64
AT4G15930.1	Thale cress	cytosol	60.0	63.41
Solyc01g066590.2.1	Tomato	cytosol, extracellular	57.69	63.03
PGSC0003DMT400029467	Potato	extracellular	57.69	63.03
CDY24919	Canola	cytosol	57.69	60.48
Bra038059.1-P	Field mustard	cytosol	57.69	60.48
CDY57865	Canola	cytosol	56.15	59.84
KRH12077	Soybean	cytosol	57.69	53.96
KRH37077	Soybean	mitochondrion	60.77	50.32
GSMUA_AchrUn_...	Banana	cytosol	33.08	48.31
KXG33416	Sorghum	cytosol	27.69	38.71
EER97375	Sorghum	cytosol	30.77	35.09
EES06648	Sorghum	cytosol	24.62	32.32
EES05573	Sorghum	cytosol	31.54	25.95
OQU86998	Sorghum	cytosol, mitochondrion	32.31	22.22
EES07042	Sorghum	cytosol, mitochondrion	30.0	19.31
EES10953	Sorghum	plastid	31.54	12.54
KRH40946	Soybean	plastid	8.46	9.48

Protein Annotations

Gene3D:3.30.740.10	MapMan:35.1	EntrezGene:8085807	UniProt:C5XFV0	InterPro:DLC_sf	InterPro:Dynein_light_1/2_CS
InterPro:Dynein_light_chain_typ-1/2	EnsemblPlants:EES00507	ProteinID:EES00507	ProteinID:EES00507.1	GO:GO:0003674	GO:GO:0003774
GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005856	GO:GO:0005868	GO:GO:0005874	GO:GO:0005875	GO:GO:0006810
GO:GO:0007017	GO:GO:0008092	GO:GO:0008150	GO:GO:0008574	GO:GO:0009987	GO:GO:0010970
GO:GO:0016043	GO:GO:0016787	GO:GO:0030286	GO:GO:0045505	GO:GO:0051959	GO:GO:0060271
GO:GO:2000582	InterPro:IPR037177	ProteinID:OQU86622.1	PFAM:PF01221	ScanProsite:PS01239	PANTHER:PTHR11886
SMART:SM01375	EnsemblPlantsGene:SORBI_3003G116900	SUPFAM:SSF54648	unigene:Sbi.7204	UniParc:UPI0001A849D9	RefSeq:XP_002455387.1
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr3:+:10539931..10544414

Molecular Weight (calculated)

14291.9 Da

IEP (calculated)

8.457

GRAVY (calculated)

-0.439

Length

130 amino acids

Sequence
(BLAST)

001: MSDEARRGGP AGAAQAVVRA SSEDRKPVGA GSPPPAAAAA AVAAHKIQLK SADMKEEMRQ EAFEIARVAF EKHSMEKDIA EYIKKEFDKN HGPTWHCIVG
101: RNFGSYVTHE TNYFVYFYID SKAVLLFKSG

Best Arabidopsis Sequence Match ( AT4G15930.1 )
(BLAST)

001: MSDGRRKKSV NGGAPAQTIL DDRRSSLPEV EASPPAGKRA VIKSADMKDD MQKEAIEIAI SAFEKYSVEK DIAENIKKEF DKKHGATWHC IVGRNFGSYV
101: THETNHFVYF YLDQKAVLLF KSG

Arabidopsis Description

At4g15930 [Source:UniProtKB/TrEMBL;Acc:Q84VW0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.