Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
mitochondrion:
27297264
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d003967_P001 | |
| Zm00001d006726_P001 | |
| Zm00001d007339_P001 | |
| Zm00001d021978_P001 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d040291_P001 | Maize | cytosol, mitochondrion | 95.08 | 90.62 |
| EES00507 | Sorghum | cytosol | 94.26 | 88.46 |
| Os01t0256400-01 | Rice | cytosol, nucleus | 86.07 | 80.77 |
| Bra012751.1-P | Field mustard | cytosol | 50.0 | 79.22 |
| GSMUA_Achr11P... | Banana | cytosol | 50.0 | 79.22 |
| GSMUA_Achr8P30040_001 | Banana | cytosol | 49.18 | 77.92 |
| TraesCS3D01G180700.1 | Wheat | cytosol | 77.87 | 67.38 |
| TraesCS3B01G205000.1 | Wheat | cytosol | 77.87 | 67.38 |
| TraesCS3A01G175300.1 | Wheat | cytosol | 77.87 | 67.38 |
| VIT_05s0077g02110.t01 | Wine grape | cytosol | 61.48 | 64.1 |
| KRH37076 | Soybean | cytosol | 60.66 | 62.71 |
| KRH12076 | Soybean | cytosol | 61.48 | 61.48 |
| PGSC0003DMT400029467 | Potato | extracellular | 59.84 | 61.34 |
| Solyc01g066590.2.1 | Tomato | cytosol, extracellular | 59.02 | 60.5 |
| CDY09728 | Canola | cytosol | 59.02 | 59.5 |
| AT4G15930.1 | Thale cress | cytosol | 59.84 | 59.35 |
| CDX90554 | Canola | cytosol | 58.2 | 58.68 |
| CDY24919 | Canola | cytosol | 59.02 | 58.06 |
| Bra038059.1-P | Field mustard | cytosol | 59.02 | 58.06 |
| CDY57865 | Canola | cytosol | 57.38 | 57.38 |
| KRH12077 | Soybean | cytosol | 59.02 | 51.8 |
| KRH37077 | Soybean | mitochondrion | 62.3 | 48.41 |
| GSMUA_AchrUn_... | Banana | cytosol | 35.25 | 48.31 |
| Zm00001d043386_P001 | Maize | cytosol | 29.51 | 38.71 |
| Zm00001d016016_P001 | Maize | cytosol | 28.69 | 29.17 |
| Zm00001d017947_P001 | Maize | cytosol, mitochondrion | 34.43 | 27.27 |
| Zm00001d051789_P002 | Maize | cytosol | 34.43 | 27.1 |
| Zm00001d003400_P001 | Maize | cytosol | 35.25 | 23.89 |
| Zm00001d009402_P001 | Maize | cytosol, mitochondrion | 33.61 | 22.78 |
| Zm00001d050905_P001 | Maize | cytosol | 31.97 | 20.1 |
| Zm00001d016977_P002 | Maize | cytosol | 31.97 | 14.72 |
| KRH40946 | Soybean | plastid | 9.02 | 9.48 |
Protein Annotations
| EntrezGene:100382335 | Gene3D:3.30.740.10 | MapMan:35.1 | ProteinID:AQK89594.1 | EMBL:BT063952 | UniProt:C0P6N3 |
| InterPro:DLC_sf | InterPro:Dynein_light_1/2_CS | InterPro:Dynein_light_chain_typ-1/2 | GO:GO:0003674 | GO:GO:0003774 | GO:GO:0003824 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005856 | GO:GO:0005874 |
| GO:GO:0005875 | GO:GO:0007017 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016787 | GO:GO:0030286 |
| InterPro:IPR037177 | PFAM:PF01221 | ScanProsite:PS01239 | PANTHER:PTHR11886 | SMART:SM01375 | SUPFAM:SSF54648 |
| UniParc:UPI0001948E4A | EnsemblPlantsGene:Zm00001d008330 | EnsemblPlants:Zm00001d008330_P001 | EnsemblPlants:Zm00001d008330_T001 | : | : |
Description
Dynein light chain type 1 family protein
Coordinates
chr8:-:5446086..5452822
Molecular Weight (calculated)
13717.3 Da
IEP (calculated)
8.457
GRAVY (calculated)
-0.532
Length
122 amino acids
Sequence
(BLAST)
(BLAST)
001: MSDEARRGPA GAAQAMLRAS SEDRKPVGAG SPAAVAHKIQ LKSADMKEEM RQDAFEIARI AFDKHSMEKD IAEYIKKEFD KNHGPTWHCI VGRNFGSYVT
101: HETNYFVYFY IDSKAVLLFK SG
101: HETNYFVYFY IDSKAVLLFK SG
001: MSDGRRKKSV NGGAPAQTIL DDRRSSLPEV EASPPAGKRA VIKSADMKDD MQKEAIEIAI SAFEKYSVEK DIAENIKKEF DKKHGATWHC IVGRNFGSYV
101: THETNHFVYF YLDQKAVLLF KSG
101: THETNHFVYF YLDQKAVLLF KSG
Arabidopsis Description
At4g15930 [Source:UniProtKB/TrEMBL;Acc:Q84VW0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.